MDN1

General Information

Gene Name : MDN1
Gene ID : ENSG00000112159.11
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: MDN1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	MDN1	ENSG00000112159.11	17.12	19.31	18.21	ENCSR000AEF
HepG2	MDN1	ENSG00000112159.11	22.54	26.01	24.27	ENCSR985KAT
K562	MDN1	ENSG00000112159.11	31.84	32.74	32.29	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for MDN1 is not avaliable on ENCORE database.

Proteins bound to RNA

MDN1 RNA is bound by 36 proteins.

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eCLIP assay for MDN1 is not avaliable on ENCORE database.

36 proteins are bound to MDN1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	90367928	90368056	-	CDS,intron-Distal	7.46182	42.84226	K562	UCHL5
chr6	90363901	90364035	-	CDS,intron-Distal	4.03585	25.34050	K562	UCHL5
chr6	90438814	90438858	-	CDS,intron-Distal	6.89735	24.26159	HepG2	BCLAF1
chr6	90371820	90371895	-	CDS,intron-Distal	5.22657	23.58355	K562	UCHL5
chr6	90367954	90368059	-	CDS,intron-Distal	4.20398	23.28456	K562	PUM1
chr6	90368326	90368400	-	CDS,intron-Distal,intron-Proximal	4.70597	22.16914	K562	UCHL5
chr6	90371219	90371297	-	CDS,intron-Distal	5.14680	21.01534	K562	UCHL5
chr6	90371895	90371959	-	CDS,intron-Distal,intron-Proximal	5.08090	20.28401	K562	UCHL5
chr6	90367942	90368048	-	CDS,intron-Distal	4.95963	19.82797	K562	ZNF622
chr6	90372516	90372587	-	CDS,intron-Distal	4.95490	19.55388	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 318 entries

eCLIP assay for MDN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for MDN1 is not available on ENCORE database.
133 RBPs can affect the levels of MDN1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for MDN1 is not available on ENCORE database.

133 RBPs can affect the gene expression of MDN1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
MDN1	ENSG00000112159.7	3442.52140	1704.32350	1.01420	49.74480	47.97820	HepG2	SRSF9
MDN1	ENSG00000112159.7	3484.09900	1883.11240	0.88760	29.00260	27.43450	HepG2	TAF15
MDN1	ENSG00000112159.7	1036.41080	2200.14470	-1.08600	24.44010	22.85580	HepG2	HNRNPA1
MDN1	ENSG00000112159.7	5056.59100	9439.21150	-0.90050	24.33850	22.00890	K562	GRSF1
MDN1	ENSG00000112159.7	1100.58680	2512.71150	-1.19100	22.39860	20.42470	HepG2	XRN2
MDN1	ENSG00000112159.7	2008.76010	3143.87360	-0.64620	21.63970	20.21620	HepG2	PUS1
MDN1	ENSG00000112159.7	4115.81000	9263.87780	-1.17040	19.92090	17.93790	K562	HSPD1
MDN1	ENSG00000112159.7	2583.63790	5142.72890	-0.99310	20.04980	17.34590	K562	UCHL5
MDN1	ENSG00000112159.7	1350.89130	2362.14100	-0.80620	18.24920	17.17260	HepG2	TIAL1
MDN1	ENSG00000112159.7	3199.97280	2094.84200	0.61110	17.93370	16.95010	HepG2	SRSF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 165 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for MDN1 is not available on ENCORE database.

25 RBPs can affect the splicing of MDN1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	MDN1	ENSG00000112159.7	chr6	-	90372510	90372686	90371837	90371958	90374205	90374347	-0.18000	0.00000	excluded	K562	SRSF1
SE	MDN1	ENSG00000112159.7	chr6	-	90372510	90372686	90371805	90371958	90374205	90374347	-0.36200	0.00000	excluded	K562	SF3B4
SE	MDN1	ENSG00000112159.7	chr6	-	90372510	90372686	90371805	90371958	90374205	90374347	-0.12900	0.00035	excluded	K562	FMR1
SE	MDN1	ENSG00000112159.7	chr6	-	90377966	90378162	90377732	90377870	90380637	90380799	0.11000	0.00002	included	K562	EFTUD2
SE	MDN1	ENSG00000112159.7	chr6	-	90372510	90372686	90371837	90371958	90374205	90374347	-0.14000	0.00000	excluded	K562	EIF4G2
SE	MDN1	ENSG00000112159.7	chr6	-	90377966	90378162	90377732	90377870	90380637	90380799	0.16200	0.00000	included	K562	SF3B1
SE	MDN1	ENSG00000112159.7	chr6	-	90372510	90372686	90371837	90371958	90374205	90374347	-0.14100	0.00000	excluded	K562	SF3B1
A3SS	MDN1	ENSG00000112159.7	chr6	-	90410364	90410603	90410364	90410575	90411276	90411445	0.15600	0.00001	longer	K562	AQR
A3SS	MDN1	ENSG00000112159.7	chr6	-	90372510	90372706	90372510	90372686	90374205	90374347	0.17400	0.00000	longer	K562	AQR
A3SS	MDN1	ENSG00000112159.7	chr6	-	90380637	90380866	90380637	90380799	90381918	90382082	0.18400	0.00000	longer	K562	AQR

Showing 1 to 10 of 53 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

MDN1

General Information

Functions

Localization

Domains (AlphaFold: MDN1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for MDN1 is not avaliable on ENCORE database.

36 proteins are bound to MDN1 RNA:

eCLIP assay for MDN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for MDN1 is not available on ENCORE database.

133 RBPs can affect the gene expression of MDN1 :

The Knockdown/knockout RNA-Seq assay for MDN1 is not available on ENCORE database.

25 RBPs can affect the splicing of MDN1 :

The Knockdown/knockout RNA-Seq assay for MDN1 is not avaliable on ENCORE database.