MBD1

General Information

Gene Name       : MBD1
Gene ID             : ENSG00000141644.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: MBD1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MBD1ENSG00000141644.1725.6630.8828.27ENCSR000AEF
HepG2MBD1ENSG00000141644.1728.0214.9321.48ENCSR985KAT
K562MBD1ENSG00000141644.1727.0117.5722.29ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MBD1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MBD1 RNA is bound by 21 proteins.  







eCLIP assay for MBD1 is not avaliable on ENCORE database.





21 proteins are bound to MBD1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr184780345947803481-3'-UTR,CDS,intron-Distal,intron-Proximal3.393963.32039HepG2PPIG
chr184780345947803493-3'-UTR,CDS,intron-Distal,intron-Proximal3.829537.34123K562DDX24
chr184780333747803368-3'-UTR,CDS,intron-Distal,intron-Proximal3.502286.32001K562DDX24
chr184779609447796182-3'-UTR,CDS,intron-Distal,intron-Proximal3.759204.58695K562SLTM
chr184780331447803369-3'-UTR,CDS,intron-Distal,intron-Proximal4.6718810.22656K562ZNF622
chr184780304547803170-3'-UTR,CDS,intron-Distal,intron-Proximal5.2482119.50272K562DDX24
chr184780309747803164-3'-UTR,CDS,intron-Distal,intron-Proximal4.9263219.17493K562SF3B4
chr184780306047803165-3'-UTR,CDS,intron-Distal,intron-Proximal3.220367.07055K562BUD13
chr184780323247803310-3'-UTR,CDS,intron-Distal3.132578.06746HepG2PPIG
chr184780319847803232-3'-UTR,CDS,intron-Distal,intron-Proximal3.269105.77687HepG2PPIG
chr184780304047803117-3'-UTR,CDS,intron-Distal,intron-Proximal3.9509710.70743HepG2PPIG
chr184780306047803136-3'-UTR,CDS,intron-Distal,intron-Proximal3.341464.83899HepG2PRPF8
chr184780310147803171-3'-UTR,CDS,intron-Distal,intron-Proximal4.8715825.59515K562EFTUD2
chr184780324047803302-3'-UTR,CDS,intron-Distal3.725917.25346K562UCHL5
chr184780346047803553-3'-UTR,CDS,intron-Distal,intron-Proximal4.097814.01763HepG2GRWD1
chr184780773247807839-5'-UTR,intron-Distal,intron-Proximal4.897757.80041HepG2DDX3X
chr184780774147807854-5'-UTR,intron-Distal,intron-Proximal3.707713.02267HepG2SRSF1
chr184780773247807817-5'-UTR,intron-Distal,intron-Proximal4.1908612.17063K562UCHL5
chr184780773147807818-5'-UTR,intron-Distal,intron-Proximal3.9379710.70743HepG2PPIG
chr184780774547807842-5'-UTR,intron-Distal,intron-Proximal4.6888112.55463HepG2PRPF4
chr184780631347806388-5'-UTR,CDS,intron-Distal,intron-Proximal5.215897.95701HepG2PPIG
chr184780774047807824-5'-UTR,intron-Distal,intron-Proximal3.520664.20880HepG2GTF2F1
chr184780774247807807-5'-UTR,intron-Distal,intron-Proximal3.102544.24005HepG2BCLAF1
chr184780775147807819-5'-UTR,intron-Distal,intron-Proximal3.183677.02016K562ZNF622
chr184780773847807803-5'-UTR,intron-Distal,intron-Proximal3.132564.85905K562EFTUD2
chr184780633347806388-5'-UTR,CDS,intron-Distal,intron-Proximal5.733218.27639K562DDX24
chr184780773647807808-5'-UTR,intron-Distal,intron-Proximal4.6019419.62313K562DDX24
chr184780774247807836-5'-UTR,intron-Distal,intron-Proximal3.335566.83419HepG2NCBP2
chr184780773147807821-5'-UTR,intron-Distal,intron-Proximal3.920717.50007K562GTF2F1
chr184779919647799264-CDS,intron-Distal,intron-Proximal4.360586.36347HepG2PPIG
chr184779988547799959-CDS,intron-Distal,intron-Proximal4.384326.34662HepG2PRPF8
chr184779928447799345-CDS,intron-Distal,intron-Proximal3.952475.81804K562BUD13
chr184780160347801669-CDS,intron-Distal,intron-Proximal5.032205.40008K562SF3B4
chr184780220447802244-CDS,intron-Distal,intron-Proximal4.642926.93329K562DDX24
chr184780227147802352-CDS,intron-Distal,intron-Proximal4.229546.12731K562UCHL5
chr184780275747802814-CDS,intron-Distal,intron-Proximal3.248373.39327K562U2AF2
chr184780227847802352-CDS,intron-Distal,intron-Proximal6.5134715.63075K562DDX24
chr184780274147802789-CDS,intron-Distal,intron-Proximal3.550725.32296K562PRPF8
chr184779920147799304-CDS,intron-Distal,intron-Proximal4.344336.94741K562ZNF622
chr184780134447801404-CDS,intron-Distal,intron-Proximal3.617288.56897K562DDX24
chr184780220047802245-CDS,intron-Distal,intron-Proximal3.854965.52342HepG2PPIG
chr184780134447801372-CDS,intron-Distal,intron-Proximal3.203123.99124HepG2PPIG
chr184779899147799051-CDS,intron-Distal,intron-Proximal3.530166.16312K562AQR
chr184779928347799356-CDS,intron-Distal,intron-Proximal3.697275.62957HepG2BUD13
chr184779919847799280-CDS,intron-Distal,intron-Proximal4.925845.58500K562UCHL5
chr184780198847802025-CDS,intron-Distal,intron-Proximal3.996853.36385K562UCHL5
chr184779904347799100-CDS,intron-Distal,intron-Proximal3.991475.52342HepG2PPIG
chr184779965747799708-CDS,intron-Distal,intron-Proximal4.590318.30573K562AQR
chr184780299547803037-CDS,intron-Distal,intron-Proximal4.752466.35567HepG2PRPF8
chr184780157147801617-CDS,intron-Distal,intron-Proximal3.718767.40563HepG2PPIG
chr184780206847802097-CDS,intron-Distal4.419195.23082K562DDX24
chr184780226647802352-CDS,intron-Distal,intron-Proximal3.278964.85880HepG2PPIG
chr184779989047799934-intron-Distal,intron-Proximal4.360596.99120K562AQR
chr184780311447803163-intron-Distal,intron-Proximal5.516147.24749HepG2EFTUD2
chr184779503447795080-intron-Distal3.497423.60615K562SLTM
chr184779504247795195-intron-Distal,intron-Proximal3.516284.90935K562SAFB2
chr184779501247795164-intron-Distal,intron-Proximal3.268753.39217K562YWHAG
chr184779448547794579-intron-Distal3.751507.26608K562SLTM
chr184780284847802957-intron-Distal,intron-Proximal6.5378111.52475K562EFTUD2
chr184780375147803841-intron-Distal3.152834.08064K562KHSRP
chr184779471147794775-intron-Distal3.497425.06168K562SLTM
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MBD1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MBD1 is not available on ENCORE database.

  • 80 RBPs can affect the levels of MBD1.  








The Knockdown/knockout RNA-Seq assay for MBD1 is not available on ENCORE database.





80 RBPs can affect the gene expression of MBD1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MBD1ENSG00000141644.13899.34060710.379600.340203.602102.92490HepG2ACO1
MBD1ENSG00000141644.131123.49170955.254500.233901.982401.38430HepG2AUH
MBD1ENSG00000141644.131384.81390995.753100.475704.723603.96800HepG2BOP1
MBD1ENSG00000141644.13850.82650632.026000.428802.849302.06480HepG2CIRBP
MBD1ENSG00000141644.131070.77750710.235200.5922010.837209.69770HepG2CKAP4
MBD1ENSG00000141644.13824.68860507.820200.699404.140703.19750HepG2CNOT7
MBD1ENSG00000141644.13916.82950714.802200.359003.335402.64250HepG2CELF1
MBD1ENSG00000141644.13781.83360657.003900.250902.192601.44400HepG2DDX19B
MBD1ENSG00000141644.13719.38090468.496700.618605.577904.65010HepG2DDX21
MBD1ENSG00000141644.131132.83450770.093000.556704.562203.77420HepG2DDX3X
MBD1ENSG00000141644.13956.42640661.810900.531102.951802.31590HepG2DDX6
MBD1ENSG00000141644.13824.73150679.643300.279002.221601.60310HepG2DKC1
MBD1ENSG00000141644.13634.10830451.985100.488405.647504.76280HepG2DNAJC2
MBD1ENSG00000141644.13702.12740532.416300.399102.217501.39030HepG2EEF2
MBD1ENSG00000141644.13625.07270443.787000.494103.259802.05850HepG2EFTUD2
MBD1ENSG00000141644.13832.95770635.932000.389302.309701.76400HepG2EIF2S1
MBD1ENSG00000141644.131207.40570702.642700.780907.678106.61570HepG2EIF4A3
MBD1ENSG00000141644.13943.16240726.384300.376702.530801.74990HepG2EIF4G2
MBD1ENSG00000141644.131448.258501096.811800.400905.405504.61370HepG2ETF1
MBD1ENSG00000141644.13572.59210384.777100.573404.061802.96320HepG2GEMIN5
MBD1ENSG00000141644.13710.62230468.416500.601204.367203.08010HepG2GNB2L1
MBD1ENSG00000141644.13706.48560460.325300.617905.464504.60040HepG2HNRNPA1
MBD1ENSG00000141644.13676.72000512.045000.402202.534501.86840HepG2HNRNPC
MBD1ENSG00000141644.13688.01350508.658300.435604.432203.68050HepG2HNRNPU
MBD1ENSG00000141644.13694.58650519.574500.418704.823003.87770HepG2ILF2
MBD1ENSG00000141644.131679.050501105.890000.602303.641802.69010HepG2LARP4
MBD1ENSG00000141644.13941.09470709.600700.407202.544901.91410HepG2MAGOH
MBD1ENSG00000141644.13938.89190713.504900.395902.241901.67050HepG2MATR3
MBD1ENSG00000141644.131139.91250730.257200.642305.709504.81480HepG2NCBP2
MBD1ENSG00000141644.13684.58660876.90110-0.357202.127601.46870HepG2NSUN2
MBD1ENSG00000141644.13768.66500628.058800.291402.398901.82450HepG2PCBP1
MBD1ENSG00000141644.13912.79390505.874100.851406.666705.11160HepG2PCBP2
MBD1ENSG00000141644.13566.75660453.679400.321002.204101.53870HepG2PPIL4
MBD1ENSG00000141644.13763.37630450.589300.760506.355405.18480HepG2PRPF8
MBD1ENSG00000141644.13913.01560639.092600.514506.804706.02180HepG2PTBP1
MBD1ENSG00000141644.13957.11300772.319300.309403.235102.60490HepG2PUM1
MBD1ENSG00000141644.13979.36670771.770300.343602.688202.02680HepG2PUM2
MBD1ENSG00000141644.13958.35340723.569100.405304.983604.20070HepG2PUS1
MBD1ENSG00000141644.13837.64900692.112000.275201.928401.39210HepG2QKI
MBD1ENSG00000141644.13792.99380488.079400.700103.729602.91520HepG2RAVER1
MBD1ENSG00000141644.131269.15390916.720900.469205.314304.65450HepG2RBM22
MBD1ENSG00000141644.13616.42590449.454100.455702.496701.49040HepG2RCC2
MBD1ENSG00000141644.13795.43700662.445600.263802.014101.47690HepG2RECQL
MBD1ENSG00000141644.131300.16730837.980200.633607.171906.14780HepG2RPLP0
MBD1ENSG00000141644.13662.52930420.554700.655606.173305.29640HepG2RPS19
MBD1ENSG00000141644.13757.00360510.433300.568504.175903.20100HepG2RPS2
MBD1ENSG00000141644.13632.21950445.711700.504202.689401.91180HepG2RRP9
MBD1ENSG00000141644.13615.04400452.972000.441204.309003.53680HepG2SAFB2
MBD1ENSG00000141644.131943.747501001.442800.956709.946208.60710HepG2SF3A3
MBD1ENSG00000141644.13983.64920665.343400.563907.856706.94130HepG2SF3B4
MBD1ENSG00000141644.13706.78740528.223800.420004.571003.77980HepG2SMN1
MBD1ENSG00000141644.131335.260101035.383400.366904.682204.08020HepG2SRFBP1
MBD1ENSG00000141644.13818.31540694.488500.236601.802601.39720HepG2SRSF1
MBD1ENSG00000141644.13910.24460718.336400.341503.201502.53630HepG2SRSF5
MBD1ENSG00000141644.13964.01400764.197200.335003.103102.37190HepG2SRSF7
MBD1ENSG00000141644.131173.16410898.924600.384004.791604.15300HepG2SSB
MBD1ENSG00000141644.131099.37030494.188201.1534021.8059020.65020HepG2TIAL1
MBD1ENSG00000141644.131570.09680870.874200.8502010.930009.65940HepG2U2AF1
MBD1ENSG00000141644.131684.23310835.354301.011503.253602.18240HepG2U2AF2
MBD1ENSG00000141644.131038.58700752.303700.465102.990102.12180HepG2UBE2L3
MBD1ENSG00000141644.131160.86090857.452300.437006.126705.29380HepG2UTP3
MBD1ENSG00000141644.13839.39770706.411400.248702.107001.50850HepG2ZC3H8
MBD1ENSG00000141644.131528.75470976.769800.6462010.829709.92430HepG2ZNF622
MBD1ENSG00000141644.131619.006601232.213000.393802.548801.92100K562AKAP8L
MBD1ENSG00000141644.132919.368001381.374701.0795023.5766022.05010K562AQR
MBD1ENSG00000141644.131039.46560678.998200.614305.928604.55840K562EFTUD2
MBD1ENSG00000141644.131356.228001122.368500.273002.568401.87080K562EIF2S2
MBD1ENSG00000141644.131073.14220658.999700.703404.374703.08420K562EIF3A
MBD1ENSG00000141644.131086.28020726.952400.579404.506903.14810K562EIF3D
MBD1ENSG00000141644.13715.28380499.004400.519405.054103.99260K562EIF3G
MBD1ENSG00000141644.132125.963001720.924900.304803.404402.36620K562EIF4G2
MBD1ENSG00000141644.13987.99430819.413300.269802.207001.65510K562FXR1
MBD1ENSG00000141644.13367.84710508.13590-0.466102.197001.57750K562G3BP2
MBD1ENSG00000141644.131505.484601195.279100.332802.125101.42600K562GPKOW
MBD1ENSG00000141644.13515.76630719.42710-0.480103.166901.83860K562HNRNPK
MBD1ENSG00000141644.131298.281001072.541000.275502.112501.41310K562POLR2G
MBD1ENSG00000141644.131102.89450660.744600.739008.134406.84550K562PRPF8
MBD1ENSG00000141644.131730.740101222.044200.502005.403104.67670K562PUS1
MBD1ENSG00000141644.131506.066401190.675500.338903.616202.95130K562RBM15
MBD1ENSG00000141644.13923.14310673.007300.455802.843402.01560K562RPS19
MBD1ENSG00000141644.131479.47040955.858300.630108.364906.53340K562SAFB
MBD1ENSG00000141644.131552.567301137.122200.449202.695501.73310K562SF3B1
MBD1ENSG00000141644.13807.97220527.912100.613905.248204.04820K562SF3B4
MBD1ENSG00000141644.13846.48320641.386700.400202.854301.80980K562SRFBP1
MBD1ENSG00000141644.131323.612301086.747200.284402.775701.60930K562SRSF7
MBD1ENSG00000141644.131042.49330729.760300.514404.561103.64780K562TARDBP
MBD1ENSG00000141644.131723.488501473.075600.226402.288001.63110K562UPF1
MBD1ENSG00000141644.131582.343801310.687000.271603.375802.45020K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MBD1 is not available on ENCORE database.





16 RBPs can affect the splicing of MBD1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEMBD1ENSG00000141644.13chr18-477978384779791047796103477961884779904647799108-0.536000.006700.09555excludedK562SRSF1
SEMBD1ENSG00000141644.13chr18-478022044780235147801969478020984780274747802788-0.212000.001710.03232excludedK562SRSF1
SEMBD1ENSG00000141644.13chr18-477997034779984147799193477993254779993347800233-0.292000.000010.00107excludedK562PRPF8
SEMBD1ENSG00000141644.13chr18-478022044780235147801969478020984780274747802788-0.271000.000620.02592excludedK562PRPF8
SEMBD1ENSG00000141644.13chr18-477997034779984147799193477993254779993347800233-0.289000.000000.00007excludedHepG2U2AF1
SEMBD1ENSG00000141644.13chr18-478005554780072347799933478002334780134647801415-0.152000.003940.06269excludedHepG2U2AF1
SEMBD1ENSG00000141644.13chr18-4779970347799841477991934779932547799933478002330.148000.001430.03590includedHepG2HNRNPK
SEMBD1ENSG00000141644.13chr18-478005554780072347799933478002334780134647801415-0.335000.000380.01191excludedHepG2HNRNPK
SEMBD1ENSG00000141644.13chr18-4780134647801415477999334780023347801498478016150.132000.001070.01491includedHepG2U2AF2
SEMBD1ENSG00000141644.13chr18-477997034779984147799193477993254779993347800233-0.196000.001880.02400excludedHepG2U2AF2
SEMBD1ENSG00000141644.13chr18-477976784779791047796103477961884779904647799108-0.353000.004510.04896excludedHepG2U2AF2
SEMBD1ENSG00000141644.13chr18-4779783847797951477938864779403347799046477991080.232000.000080.00145includedK562AQR
SEMBD1ENSG00000141644.13chr18-4779949347799614477991934779932547799703477998410.089000.000000.00000includedK562AQR
SEMBD1ENSG00000141644.13chr18-477997034779984147799193477993254779993347800233-0.241000.000000.00008excludedK562FXR1
SEMBD1ENSG00000141644.13chr18-4780134647801415477999334780023347801498478016150.155000.000460.02553includedHepG2SFPQ
SEMBD1ENSG00000141644.13chr18-4779783847797910477938864779403347799046477991080.326000.000030.00212includedK562TARDBP
SEMBD1ENSG00000141644.13chr18-4780055547800723477999334780023347801346478014150.206000.002020.06431includedK562HNRNPU
SEMBD1ENSG00000141644.13chr18-477978384779791047796103477961884779904647799108-0.438000.001860.06033excludedK562HNRNPU
SEMBD1ENSG00000141644.13chr18-4779783847797910477938864779403347799046477991080.254000.001380.03481includedK562RBM15
SEMBD1ENSG00000141644.13chr18-477997034779984147799193477993254779993347800233-0.336000.000020.00137excludedHepG2HNRNPC
SEMBD1ENSG00000141644.13chr18-4779783847797910477938864779403347799046477991080.426000.000000.00021includedK562PTBP1
SEMBD1ENSG00000141644.13chr18-477997034779984147799193477993254779993347800233-0.309000.000000.00000excludedK562HNRNPC
SEMBD1ENSG00000141644.13chr18-478022044780235147801969478020984780274747802788-0.274000.000380.00852excludedK562HNRNPC
SEMBD1ENSG00000141644.13chr18-478005554780072347800049478002334780134647801415-0.299000.000000.00000excludedK562HNRNPC
A3SSMBD1ENSG00000141644.13chr18-477997034779984147799703477997964779993347800233-0.241000.000160.02516shorterK562FXR1
A3SSMBD1ENSG00000141644.13chr18-4779783847797951477978384779791047799046477991080.286000.000010.00006longerK562AQR
A3SSMBD1ENSG00000141644.13chr18-4780274747802862478027474780278847803031478031140.066000.000020.00022longerK562AQR
A3SSMBD1ENSG00000141644.13chr18-4780220447802430478022044780235147802747478028620.164000.000000.00000longerK562AQR
A3SSMBD1ENSG00000141644.13chr18-4780345947803670478034594780357447806252478064240.087000.000000.00001longerK562AQR
A3SSMBD1ENSG00000141644.13chr18-4779919347799417477991934779932547799703477998410.067000.000010.00007longerK562AQR
A3SSMBD1ENSG00000141644.13chr18-4780625247806440478062524780638747807732478081440.151000.000020.00016longerK562AQR
RIMBD1ENSG00000141644.13chr18-4780303147803368478030314780311447803201478033680.312000.003500.04707includedK562SF3B4
RIMBD1ENSG00000141644.13chr18-4780303147803368478030314780311447803201478033680.207000.003780.09294includedK562HNRNPUL1
RIMBD1ENSG00000141644.13chr18-478030314780336847803031478031144780320147803368-0.178000.000170.00330excludedK562PRPF8
RIMBD1ENSG00000141644.13chr18-478030314780336847803031478031144780320147803368-0.141000.008900.07358excludedK562EFTUD2
MXEMBD1ENSG00000141644.13chr18-47800555478007234780134647801415477999334780023347801498478016150.096000.007620.097241includedHepG2U2AF1
MXEMBD1ENSG00000141644.13chr18-47800555478007234780134647801415477999334780023347801498478016150.263000.000330.020061includedK562FXR1
MXEMBD1ENSG00000141644.13chr18-4779993347800233478005554780072347799193477993254780134647801415-0.276000.000570.005052includedHepG2U2AF2
MXEMBD1ENSG00000141644.13chr18-4779993347800233478005554780072047799193477993254780134647801415-0.200000.013580.069082includedHepG2U2AF2
MXEMBD1ENSG00000141644.13chr18-47800555478007234780134647801415477999334780023347801498478016150.212000.000010.000701includedK562HNRNPC
MXEMBD1ENSG00000141644.13chr18-4779993347800233478005554780072347799193477993254780134647801415-0.183000.000090.002862includedK562HNRNPC
MXEMBD1ENSG00000141644.13chr18-47800555478007234780134647801415477999334780023347801498478016150.309000.000180.006811includedHepG2HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MBD1 is not avaliable on ENCORE database.