HDAC5

General Information

Gene Name : HDAC5
Gene ID : ENSG00000108840.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: HDAC5)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	HDAC5	ENSG00000108840.15	4.19	13.06	8.62	ENCSR000AEF
HepG2	HDAC5	ENSG00000108840.15	20.99	7.31	14.15	ENCSR985KAT
K562	HDAC5	ENSG00000108840.15	14.78	11.02	12.90	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for HDAC5 is not avaliable on ENCORE database.

Proteins bound to RNA

HDAC5 RNA is bound by 23 proteins.

CanvasJS.com

eCLIP assay for HDAC5 is not avaliable on ENCORE database.

23 proteins are bound to HDAC5 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	42155991	42156087	-	CDS,intron-Distal,intron-Proximal	5.88144	17.08395	K562	SF3B4
chr17	42200736	42200808	-	5'-UTR,intron-Distal,intron-Proximal	4.58126	13.38336	HepG2	XPO5
chr17	42156587	42156670	-	CDS,intron-Distal,intron-Proximal	4.06982	12.50926	HepG2	U2AF2
chr17	42170848	42170911	-	CDS,intron-Distal,intron-Proximal	6.18361	12.01365	K562	SF3B4
chr17	42171170	42171248	-	CDS,intron-Distal,intron-Proximal	3.44694	9.87651	HepG2	BUD13
chr17	42160881	42160903	-	intron-Distal,intron-Proximal	4.26014	9.59600	K562	AQR
chr17	42160859	42160881	-	intron-Distal,intron-Proximal	4.27247	9.59600	K562	AQR
chr17	42169944	42169985	-	intron-Distal,intron-Proximal	6.08833	8.88193	HepG2	EFTUD2
chr17	42164794	42164866	-	CDS,intron-Distal	4.44677	8.51520	K562	DDX24
chr17	42160985	42161024	-	CDS,intron-Distal,intron-Proximal	4.03178	8.40792	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 77 entries

eCLIP assay for HDAC5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for HDAC5 is not available on ENCORE database.
145 RBPs can affect the levels of HDAC5.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for HDAC5 is not available on ENCORE database.

145 RBPs can affect the gene expression of HDAC5 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
HDAC5	ENSG00000108840.11	939.91180	3281.06230	-1.80360	119.71790	117.75290	HepG2	SRSF1
HDAC5	ENSG00000108840.11	2494.51730	825.27390	1.59570	84.95190	82.22910	HepG2	HNRNPF
HDAC5	ENSG00000108840.11	2587.78660	1039.46980	1.31580	76.68110	74.18850	HepG2	SLBP
HDAC5	ENSG00000108840.11	2148.58950	810.78820	1.40590	64.52930	62.23120	HepG2	SRSF7
HDAC5	ENSG00000108840.11	2493.61450	812.66390	1.61740	57.73390	55.21320	HepG2	IGF2BP1
HDAC5	ENSG00000108840.11	1495.25490	3019.39320	-1.01390	40.74470	39.16240	HepG2	PTBP1
HDAC5	ENSG00000108840.11	1667.32490	888.95370	0.90730	31.97330	29.89970	K562	NSUN2
HDAC5	ENSG00000108840.11	3285.06770	1493.97840	1.13670	27.82000	26.11740	K562	AGGF1
HDAC5	ENSG00000108840.11	1186.62000	2273.40780	-0.93800	27.06580	25.77700	HepG2	RBM22
HDAC5	ENSG00000108840.11	1817.17520	3143.33800	-0.79060	26.57700	25.06310	HepG2	SF3B4
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 178 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for HDAC5 is not available on ENCORE database.

13 RBPs can affect the splicing of HDAC5 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	HDAC5	ENSG00000108840.11	chr17	-	42159952	42160040			42158130	42158250	42160132	42160188	-0.09600	0.00000	0.00017	excluded	HepG2	U2AF1
SE	HDAC5	ENSG00000108840.11	chr17	-	42162389	42162523			42161922	42162043	42163939	42164105	-0.24500	0.00000	0.00020	excluded	HepG2	U2AF1
A3SS	HDAC5	ENSG00000108840.11	chr17	-	42157474	42157677			42157474	42157593	42157768	42157903	0.09600	0.00000	0.00000	longer	K562	AQR
A3SS	HDAC5	ENSG00000108840.11	chr17	-	42156162	42156404			42156162	42156247	42156511	42156645	0.08200	0.00000	0.00001	longer	K562	AQR
MXE	HDAC5	ENSG00000108840.11	chr17	-	42169539	42169652	42169748	42169895	42169067	42169199	42170043	42170174	-0.15100	0.00000	0.00004	2included	HepG2	U2AF2
MXE	HDAC5	ENSG00000108840.11	chr17	-	42169539	42169652	42169748	42169895	42169067	42169199	42170043	42170174	-0.11600	0.00000	0.00007	2included	K562	FXR2
SE	HDAC5	ENSG00000108840.11	chr17	-	42162389	42162523			42161922	42162043	42163939	42164105	-0.12900	0.00004	0.00210	excluded	K562	AGGF1
A5SS	HDAC5	ENSG00000108840.11	chr17	-	42169748	42169895			42169763	42169895	42169539	42169652	0.14700	0.00005	0.08793	longer	K562	EXOSC5
SE	HDAC5	ENSG00000108840.11	chr17	-	42162389	42162523			42161922	42162043	42163939	42164105	-0.14600	0.00008	0.00498	excluded	K562	UTP18
A3SS	HDAC5	ENSG00000108840.11	chr17	-	42158130	42158291			42158130	42158250	42159952	42160040	0.06200	0.00029	0.00229	longer	K562	AQR

Showing 1 to 10 of 20 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

HDAC5

General Information

Functions

Localization

Domains (AlphaFold: HDAC5)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for HDAC5 is not avaliable on ENCORE database.

23 proteins are bound to HDAC5 RNA:

eCLIP assay for HDAC5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for HDAC5 is not available on ENCORE database.

145 RBPs can affect the gene expression of HDAC5 :

The Knockdown/knockout RNA-Seq assay for HDAC5 is not available on ENCORE database.

13 RBPs can affect the splicing of HDAC5 :

The Knockdown/knockout RNA-Seq assay for HDAC5 is not avaliable on ENCORE database.