FAT1

General Information

Gene Name : FAT1
Gene ID : ENSG00000083857.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: FAT1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	FAT1	ENSG00000083857.13	0.05	0.05	0.05	ENCSR000AEF
HepG2	FAT1	ENSG00000083857.13	153.05	105.30	129.18	ENCSR985KAT
K562	FAT1	ENSG00000083857.13	13.96	16.78	15.37	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for FAT1 is not avaliable on ENCORE database.

Proteins bound to RNA

FAT1 RNA is bound by 39 proteins.

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eCLIP assay for FAT1 is not avaliable on ENCORE database.

39 proteins are bound to FAT1 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	187518254	187518326	-	CDS,intron-Distal,intron-Proximal	5.40172	48.67681	HepG2	LIN28B
chr4	187647608	187647717	-	5'-UTR,intron-Distal	3.92057	42.69334	HepG2	DDX3X
chr4	187524088	187524189	-	CDS,intron-Distal,intron-Proximal	4.21968	24.56048	HepG2	LIN28B
chr4	187644823	187644932	-	5'-UTR,intron-Distal	4.58984	23.82117	HepG2	DDX3X
chr4	187540657	187540739	-	CDS,intron-Distal	4.64524	22.72500	HepG2	IGF2BP1
chr4	187630226	187630345	-	CDS,intron-Distal	4.01411	21.93625	HepG2	EIF3H
chr4	187647734	187647778	-	5'-UTR,intron-Distal	4.61380	21.71566	HepG2	DDX3X
chr4	187647778	187647843	-	5'-UTR,intron-Distal	6.01038	19.67840	HepG2	DDX3X
chr4	187538317	187538356	-	CDS,intron-Distal,intron-Proximal	4.27917	19.06554	HepG2	LIN28B
chr4	187540577	187540624	-	CDS,intron-Distal	6.14352	18.36099	HepG2	LIN28B
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 217 entries

eCLIP assay for FAT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for FAT1 is not available on ENCORE database.
146 RBPs can affect the levels of FAT1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for FAT1 is not available on ENCORE database.

146 RBPs can affect the gene expression of FAT1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
FAT1	ENSG00000083857.9	5395.41070	15473.86860	-1.52000	126.64170	124.57970	HepG2	SSB
FAT1	ENSG00000083857.9	29104.98980	11431.96090	1.34810	98.06860	95.48370	HepG2	CELF1
FAT1	ENSG00000083857.9	22860.93910	10716.25740	1.09300	92.84670	90.66200	HepG2	ACO1
FAT1	ENSG00000083857.9	13000.50160	5606.03590	1.21340	86.52280	84.51600	HepG2	PTBP1
FAT1	ENSG00000083857.9	10921.29430	4956.20190	1.13970	86.55430	84.37490	HepG2	SRSF9
FAT1	ENSG00000083857.9	13121.58350	5836.06370	1.16880	86.04870	83.65760	HepG2	SF3B4
FAT1	ENSG00000083857.9	18832.79280	8935.07070	1.07560	85.71790	83.14480	HepG2	UTP3
FAT1	ENSG00000083857.9	21547.33420	10178.42460	1.08190	64.85550	63.12780	HepG2	ZNF622
FAT1	ENSG00000083857.9	4143.23870	11826.65190	-1.51320	63.07060	60.84920	HepG2	HNRNPA1
FAT1	ENSG00000083857.9	2562.50530	8992.76040	-1.81120	63.03400	60.04400	HepG2	XRN2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 166 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for FAT1 is not available on ENCORE database.

5 RBPs can affect the splicing of FAT1 :

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Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	FAT1	ENSG00000083857.9	chr4	-	187538861	187542929	187538158	187538355	187549307	187549518	-0.05900	0.00000	0.00027	excluded	HepG2	SRSF7
SE	FAT1	ENSG00000083857.9	chr4	-	187516294	187516345	187510225	187510374	187516842	187516954	0.05300	0.00001	0.00050	included	HepG2	U2AF1
SE	FAT1	ENSG00000083857.9	chr4	-	187538861	187542929	187538158	187538355	187549307	187549518	0.05200	0.00058	0.01999	included	HepG2	SF3A3
SE	FAT1	ENSG00000083857.9	chr4	-	187538861	187542929	187538158	187538355	187549307	187549518	-0.08600	0.00094	0.03652	excluded	HepG2	HNRNPC
SE	FAT1	ENSG00000083857.9	chr4	-	187538861	187542929	187538158	187538355	187549307	187549518	0.09100	0.00111	0.05576	included	HepG2	PTBP1

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

FAT1

General Information

Functions

Localization

Domains (AlphaFold: FAT1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for FAT1 is not avaliable on ENCORE database.

39 proteins are bound to FAT1 RNA:

eCLIP assay for FAT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for FAT1 is not available on ENCORE database.

146 RBPs can affect the gene expression of FAT1 :

The Knockdown/knockout RNA-Seq assay for FAT1 is not available on ENCORE database.

5 RBPs can affect the splicing of FAT1 :

The Knockdown/knockout RNA-Seq assay for FAT1 is not avaliable on ENCORE database.