DBF4B

General Information

Gene Name : DBF4B
Gene ID : ENSG00000161692.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: DBF4B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	DBF4B	ENSG00000161692.17	9.97	14.81	12.39	ENCSR000AEF
HepG2	DBF4B	ENSG00000161692.17	18.88	18.22	18.55	ENCSR985KAT
K562	DBF4B	ENSG00000161692.17	19.80	17.89	18.84	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for DBF4B is not avaliable on ENCORE database.

Proteins bound to RNA

DBF4B RNA is bound by 11 proteins.

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eCLIP assay for DBF4B is not avaliable on ENCORE database.

11 proteins are bound to DBF4B RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	42827355	42827445	+	3'-UTR,intron-Distal	3.84921	8.24727	K562	UPF1
chr17	42827810	42827856	+	intron-Distal	5.10879	7.11441	K562	PUM2
chr17	42827503	42827562	+	3'-UTR,intron-Distal	5.09886	6.57498	HepG2	PCBP2
chr17	42786060	42786208	+	5'-UTR,CDS,intron-Proximal	3.16668	6.35635	K562	UCHL5
chr17	42824447	42824564	+	3'-UTR,CDS,intron-Proximal	3.60791	6.23940	HepG2	PPIG
chr17	42808374	42808439	+	CDS,intron-Proximal	4.14126	6.23016	HepG2	PRPF8
chr17	42826955	42827038	+	3'-UTR,intron-Distal	3.48986	6.04024	K562	UPF1
chr17	42827259	42827330	+	3'-UTR,intron-Distal	3.30266	5.45410	K562	UPF1
chr17	42786671	42786740	+	CDS,intron-Distal,intron-Proximal	3.94289	4.77136	HepG2	PPIG
chr17	42827392	42827546	+	3'-UTR,intron-Distal	3.68381	4.52780	K562	HNRNPK
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 17 entries

eCLIP assay for DBF4B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for DBF4B is not available on ENCORE database.
109 RBPs can affect the levels of DBF4B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for DBF4B is not available on ENCORE database.

109 RBPs can affect the gene expression of DBF4B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
DBF4B	ENSG00000161692.13	250.14750	609.36300	-1.28450	26.79770	25.54000	HepG2	ZNF622
DBF4B	ENSG00000161692.13	274.41970	613.90840	-1.16160	22.46710	20.97920	HepG2	CKAP4
DBF4B	ENSG00000161692.13	99.97630	368.50850	-1.88200	18.48980	16.79410	HepG2	RRP9
DBF4B	ENSG00000161692.13	234.22460	590.85370	-1.33490	18.14420	16.69700	HepG2	RPLP0
DBF4B	ENSG00000161692.13	428.89640	796.13650	-0.89240	15.53160	14.59780	HepG2	SRFBP1
DBF4B	ENSG00000161692.13	275.40070	554.06130	-1.00850	15.55840	14.15890	HepG2	UPF1
DBF4B	ENSG00000161692.13	216.68690	488.55090	-1.17290	14.95820	13.96000	HepG2	TIAL1
DBF4B	ENSG00000161692.13	373.49700	747.19710	-1.00040	15.81560	13.95460	HepG2	HNRNPA2B1
DBF4B	ENSG00000161692.13	653.76320	275.59840	1.24610	15.10860	13.62840	HepG2	FXR1
DBF4B	ENSG00000161692.13	604.80150	295.33010	1.03400	14.53790	13.48120	HepG2	NELFE
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 121 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for DBF4B is not available on ENCORE database.

9 RBPs can affect the splicing of DBF4B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	DBF4B	ENSG00000161692.13	chr17	+	42809545	42809633	42808332	42808383	42811457	42811531	-0.57900	0.00004	0.00167	excluded	HepG2	SRSF1
SE	DBF4B	ENSG00000161692.13	chr17	+	42786671	42786734	42786050	42786207	42800247	42800390	-0.33800	0.00006	0.00398	excluded	K562	HNRNPU
A3SS	DBF4B	ENSG00000161692.13	chr17	+	42807249	42807464	42807272	42807464	42800247	42800390	0.12700	0.00016	0.00132	longer	K562	AQR
SE	DBF4B	ENSG00000161692.13	chr17	+	42809545	42809633	42808332	42808383	42811457	42811531	0.33400	0.00037	0.07529	included	K562	WDR3
SE	DBF4B	ENSG00000161692.13	chr17	+	42809545	42809633	42808332	42808383	42811457	42811531	0.44500	0.00038	0.09540	included	K562	IGF2BP2
SE	DBF4B	ENSG00000161692.13	chr17	+	42786671	42786734	42786050	42786207	42800247	42800289	-0.26300	0.00062	0.01897	excluded	K562	AGGF1
SE	DBF4B	ENSG00000161692.13	chr17	+	42809545	42809633	42808332	42808383	42811457	42811531	-0.30000	0.00168	0.02941	excluded	K562	HNRNPC
SE	DBF4B	ENSG00000161692.13	chr17	+	42809545	42809633	42808332	42808383	42811457	42811531	-0.34200	0.00480	0.05142	excluded	HepG2	U2AF2
SE	DBF4B	ENSG00000161692.13	chr17	+	42809545	42809633	42808332	42808383	42811457	42811531	-0.46300	0.00615	0.08895	excluded	HepG2	U2AF1
SE	DBF4B	ENSG00000161692.13	chr17	+	42786671	42786734	42786065	42786207	42800247	42800390	-0.15300	0.00765	0.06574	excluded	K562	AQR

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

DBF4B

General Information

Functions

Localization

Domains (AlphaFold: DBF4B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for DBF4B is not avaliable on ENCORE database.

11 proteins are bound to DBF4B RNA:

eCLIP assay for DBF4B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for DBF4B is not available on ENCORE database.

109 RBPs can affect the gene expression of DBF4B :

The Knockdown/knockout RNA-Seq assay for DBF4B is not available on ENCORE database.

9 RBPs can affect the splicing of DBF4B :

The Knockdown/knockout RNA-Seq assay for DBF4B is not avaliable on ENCORE database.