COPB1

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	COPB1	ENSG00000129083.12	67.80	64.96	66.38	ENCSR000AEF
HepG2	COPB1	ENSG00000129083.12	70.86	93.83	82.34	ENCSR985KAT
K562	COPB1	ENSG00000129083.12	65.85	61.63	63.74	ENCSR000AEO

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
COPB1	ENCAB732UJL	A304-723A	1			Released, ENCODE4
COPB1	ENCAB996UZN	A304-724A	1			Released, ENCODE4

GeneName	Cell_Line	Method	Sample_reps	Control_reps	KD%	Status	Project
COPB1	K562	CRISPR	BGKcLV28-31,BGKcLV28-32	BGKcLV28-1,BGKcLV28-2	25.8,36.3	NotSatisfied	ENCODE4
COPB1	K562	CRISPR	BGKcLV35-13,BGKcLV35-14	BGKcLV35-1,BGKcLV35-2	54.1,40.8	NotSatisfied	ENCORE2
COPB1	K562	CRISPR	BGKcLV46-9,BGKcLV46-10	BGKcLV46-1,BGKcLV46-2	50.5,53.2	Experimented	ENCORE2
COPB1	K562	CRISPR	BGKcLV46-11,BGKcLV46-12	BGKcLV46-1,BGKcLV46-2	80.4,76.9	Experimented	ENCORE2
COPB1	HepG2	CRISPR	BGHcLV29-31,BGHcLV29-32	BGHcLV29-1,BGHcLV29-2	0,2	NotSatisfied	ENCODE4
COPB1	HepG2	CRISPR	BGHcLV34-11,BGHcLV34-12	BGHcLV34-1,BGHcLV34-2	0.0,0.0	NotSatisfied	ENCORE2

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for COPB1 is not avaliable on ENCORE database.

Proteins bound to RNA

COPB1 RNA is bound by 48 proteins.

eCLIP assay for COPB1 is not avaliable on ENCORE database.

48 proteins are bound to COPB1 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	14479224	14479331	-	3'-UTR,intron-Distal,intron-Proximal	5.63473	12.21716	K562	TIA1
chr11	14479109	14479194	-	3'-UTR,intron-Distal	3.99161	6.33374	K562	TIA1
chr11	14479118	14479190	-	3'-UTR,intron-Distal	4.86786	10.46935	K562	ZC3H11A
chr11	14479127	14479196	-	3'-UTR,intron-Distal	4.71558	12.99588	K562	NOLC1
chr11	14479203	14479289	-	3'-UTR,intron-Distal,intron-Proximal	3.62324	5.31971	K562	IGF2BP1
chr11	14479099	14479191	-	3'-UTR,intron-Distal	3.79700	10.64078	K562	PABPC4
chr11	14479132	14479188	-	3'-UTR,intron-Distal	5.25256	7.84269	K562	IGF2BP1
chr11	14479111	14479195	-	3'-UTR,intron-Distal	5.65903	32.39336	HepG2	SUB1
chr11	14479090	14479132	-	3'-UTR,intron-Distal,intron-Proximal,polyA_site	4.43638	3.50232	K562	IGF2BP1
chr11	14479286	14479337	-	3'-UTR,intron-Distal,intron-Proximal	3.38947	6.69112	HepG2	LARP4
chr11	14521296	14521351	-	5'-UTR,intron-Distal,intron-Proximal	4.63897	6.11569	K562	FMR1
chr11	14521244	14521257	-	5'-UTR,intron-Distal,intron-Proximal	5.82905	4.75028	K562	FXR2
chr11	14520485	14520535	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.85599	11.78563	HepG2	U2AF2
chr11	14520506	14520557	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	4.96379	5.68078	HepG2	AQR
chr11	14521239	14521279	-	5'-UTR,intron-Distal,intron-Proximal	3.52927	4.00968	HepG2	DDX3X
chr11	14521243	14521275	-	5'-UTR,intron-Distal,intron-Proximal	3.70027	3.64037	HepG2	NCBP2
chr11	14520437	14520532	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.15001	16.04669	K562	DDX3X
chr11	14520496	14520544	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	4.88279	12.58875	K562	AQR
chr11	14521287	14521308	-	5'-UTR,intron-Distal,intron-Proximal	4.31296	5.88509	K562	FXR2
chr11	14521293	14521389	-	5'-UTR,intron-Distal,intron-Proximal	4.50468	32.60350	K562	DDX3X
chr11	14521224	14521393	-	5'-UTR,intron-Distal,intron-Proximal	4.31891	15.55119	HepG2	SRSF1
chr11	14521301	14521385	-	5'-UTR,intron-Distal,intron-Proximal	3.43048	12.04102	HepG2	NCBP2
chr11	14521241	14521296	-	5'-UTR,intron-Distal,intron-Proximal	5.64302	9.34514	K562	FMR1
chr11	14521245	14521293	-	5'-UTR,intron-Distal,intron-Proximal	4.79364	21.03043	K562	DDX3X
chr11	14521279	14521389	-	5'-UTR,intron-Distal,intron-Proximal	4.58284	17.71274	HepG2	DDX3X
chr11	14521257	14521287	-	5'-UTR,intron-Distal,intron-Proximal	5.11699	7.33300	K562	FXR2
chr11	14521280	14521393	-	5'-UTR,intron-Distal,intron-Proximal	3.73000	7.35122	K562	SRSF1
chr11	14521242	14521344	-	5'-UTR,intron-Distal,intron-Proximal	3.20111	3.06765	HepG2	SRSF9
chr11	14521250	14521328	-	5'-UTR,intron-Distal,intron-Proximal	4.24600	9.75242	K562	GEMIN5
chr11	14520486	14520563	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	6.18872	48.61699	K562	SF3B4
chr11	14496052	14496130	-	CDS,intron-Distal	3.68597	28.17370	HepG2	BCLAF1
chr11	14497335	14497375	-	CDS,intron-Distal	3.71380	3.22245	K562	GRWD1
chr11	14486459	14486465	-	CDS,intron-Distal	3.67163	6.36847	HepG2	BCLAF1
chr11	14515827	14515910	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.18999	17.56241	K562	ZNF622
chr11	14480203	14480231	-	CDS,intron-Distal	5.05681	7.20266	K562	BUD13
chr11	14482743	14482832	-	CDS,intron-Distal,intron-Proximal	3.92352	10.50312	K562	SND1
chr11	14512114	14512204	-	CDS,intron-Distal	3.04602	5.56511	HepG2	GRWD1
chr11	14479408	14479414	-	CDS,intron-Distal	3.71311	4.44431	K562	BUD13
chr11	14496070	14496135	-	CDS,intron-Distal	4.10459	3.18236	K562	FXR1
chr11	14512160	14512225	-	CDS,intron-Distal	4.09874	5.92795	K562	METAP2
chr11	14480229	14480233	-	CDS,intron-Distal	3.63667	7.59425	K562	YBX3
chr11	14515797	14515854	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.53106	6.74973	K562	FXR1
chr11	14482858	14482875	-	CDS,intron-Distal,intron-Proximal	3.95736	8.79898	HepG2	BCLAF1
chr11	14498524	14498560	-	CDS,intron-Distal	3.46914	10.11361	HepG2	BCLAF1
chr11	14512111	14512180	-	CDS,intron-Distal	4.32100	15.25586	K562	DDX24
chr11	14496057	14496126	-	CDS,intron-Distal	3.24258	12.62988	K562	DDX24
chr11	14491051	14491101	-	CDS,intron-Distal	3.56734	11.47503	HepG2	BCLAF1
chr11	14481814	14481841	-	CDS,intron-Distal	3.58947	5.69590	K562	DDX24
chr11	14497336	14497402	-	CDS,intron-Distal	5.42224	10.31155	HepG2	G3BP1
chr11	14490235	14490237	-	CDS,intron-Distal	3.37663	4.56058	HepG2	BCLAF1
chr11	14496062	14496127	-	CDS,intron-Distal	3.30450	11.08040	K562	BUD13
chr11	14482832	14482878	-	CDS,intron-Distal,intron-Proximal	3.83774	7.97040	K562	SND1
chr11	14487826	14487848	-	CDS,intron-Distal,intron-Proximal	3.38868	3.72202	HepG2	G3BP1
chr11	14515801	14515930	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.53586	12.07801	HepG2	GRWD1
chr11	14515755	14515821	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.42249	8.17243	K562	RPS3
chr11	14490899	14490923	-	CDS,intron-Distal	3.60066	9.83905	HepG2	BCLAF1
chr11	14490241	14490296	-	CDS,intron-Distal	3.78379	6.18214	HepG2	GRWD1
chr11	14497400	14497439	-	CDS,intron-Distal,intron-Proximal	3.02287	3.55392	K562	YBX3
chr11	14480127	14480138	-	CDS,intron-Distal	3.28628	16.02725	K562	YBX3
chr11	14504578	14504622	-	CDS,intron-Distal	5.08515	13.15686	HepG2	BCLAF1
chr11	14515821	14515918	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.42958	5.50142	HepG2	ZNF800
chr11	14497364	14497466	-	CDS,intron-Distal,intron-Proximal	4.20927	28.53220	HepG2	BCLAF1
chr11	14502306	14502347	-	CDS,intron-Distal	3.51552	7.93092	K562	DDX24
chr11	14515941	14515982	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.46914	5.15500	HepG2	BCLAF1
chr11	14490226	14490312	-	CDS,intron-Distal,intron-Proximal	5.79978	15.00817	HepG2	G3BP1
chr11	14482849	14482884	-	CDS,intron-Distal,intron-Proximal	3.17955	5.96743	K562	BUD13
chr11	14502307	14502356	-	CDS,intron-Distal	3.13227	11.04847	HepG2	BCLAF1
chr11	14515755	14515798	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.32305	7.13168	HepG2	BCLAF1
chr11	14480149	14480154	-	CDS,intron-Distal	3.44445	11.60825	K562	YBX3
chr11	14507947	14508016	-	CDS,intron-Distal	4.75624	4.48916	K562	FXR1
chr11	14497408	14497458	-	CDS,intron-Distal,intron-Proximal	4.19952	4.60638	K562	GRWD1
chr11	14515761	14515912	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.14076	5.24900	K562	SRSF1
chr11	14487945	14487968	-	CDS,intron-Distal	3.29798	8.84415	HepG2	BCLAF1
chr11	14504578	14504672	-	CDS,intron-Distal	3.01920	6.25706	K562	LIN28B
chr11	14504581	14504614	-	CDS,intron-Distal	3.54274	4.22242	HepG2	G3BP1
chr11	14510113	14510131	-	CDS,intron-Distal,intron-Proximal	5.62201	7.00086	K562	DDX24
chr11	14510094	14510138	-	CDS,intron-Distal,intron-Proximal	3.76051	5.93727	K562	SF3B4
chr11	14490336	14490405	-	CDS,intron-Distal	4.56865	21.85248	HepG2	BCLAF1
chr11	14502432	14502448	-	CDS,intron-Distal,intron-Proximal	3.81589	9.08790	HepG2	BCLAF1
chr11	14515754	14515797	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.82145	3.55391	K562	FXR1
chr11	14486551	14486575	-	CDS,intron-Distal	3.88193	5.73518	HepG2	G3BP1
chr11	14490981	14491048	-	CDS,intron-Distal	3.54381	15.42098	HepG2	BCLAF1
chr11	14481828	14481877	-	CDS,intron-Distal,intron-Proximal	3.49211	5.75231	K562	AQR
chr11	14498507	14498560	-	CDS,intron-Distal	3.35768	4.48452	HepG2	FXR2
chr11	14515919	14515931	-	3'-UTR,CDS,intron-Distal	3.81658	7.00366	K562	LIN28B
chr11	14498464	14498511	-	CDS,intron-Distal,intron-Proximal	3.01329	6.48096	HepG2	G3BP1
chr11	14479393	14479440	-	CDS,intron-Distal,intron-Proximal	4.82468	8.05832	K562	SF3B4
chr11	14490881	14490898	-	CDS,intron-Distal,intron-Proximal	3.93844	11.21209	HepG2	BCLAF1
chr11	14515805	14515853	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.31001	4.77467	K562	SND1
chr11	14496058	14496113	-	CDS,intron-Distal	4.41119	7.35426	K562	SND1
chr11	14504676	14504700	-	CDS,intron-Distal,intron-Proximal	3.04902	3.65461	K562	BUD13
chr11	14481753	14481790	-	CDS,intron-Distal,intron-Proximal	3.29957	7.30556	K562	YBX3
chr11	14502308	14502394	-	CDS,intron-Distal	4.30707	3.55391	K562	FXR1
chr11	14487850	14487890	-	CDS,intron-Distal	3.01110	8.07199	HepG2	BCLAF1
chr11	14501120	14501152	-	CDS,intron-Distal	4.16260	3.29312	HepG2	FXR2
chr11	14490306	14490398	-	CDS,intron-Distal	3.19952	5.80673	K562	GRWD1
chr11	14510098	14510133	-	CDS,intron-Distal,intron-Proximal	4.02652	5.81804	K562	BUD13
chr11	14490335	14490402	-	CDS,intron-Distal	4.08353	7.35476	HepG2	GRWD1
chr11	14497462	14497491	-	CDS,intron-Distal,intron-Proximal	3.01810	5.92856	HepG2	G3BP1
chr11	14490249	14490296	-	CDS,intron-Distal	3.26651	6.70954	HepG2	BCLAF1
chr11	14480111	14480127	-	CDS,intron-Distal	3.52712	16.27835	K562	YBX3
chr11	14490859	14490885	-	CDS,intron-Distal,intron-Proximal	3.13820	5.63069	K562	AQR
chr11	14496127	14496170	-	CDS,intron-Distal,intron-Proximal	3.44704	7.92114	K562	BUD13
chr11	14486407	14486461	-	CDS,intron-Distal,intron-Proximal	3.46766	5.75231	K562	AQR
chr11	14496095	14496138	-	CDS,intron-Distal	5.08623	16.53878	K562	RPS3
chr11	14507932	14508041	-	CDS,intron-Distal	5.10440	3.98311	K562	IGF2BP1
chr11	14497379	14497436	-	CDS,intron-Distal,intron-Proximal	4.10820	4.68575	HepG2	FXR2
chr11	14501214	14501255	-	CDS,intron-Distal	3.67353	7.90300	K562	BUD13
chr11	14497402	14497462	-	CDS,intron-Distal,intron-Proximal	3.89873	7.01771	HepG2	G3BP1
chr11	14490247	14490302	-	CDS,intron-Distal	3.11649	3.61008	K562	ZNF800
chr11	14515755	14515827	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.12073	13.44187	K562	ZNF622
chr11	14515293	14515347	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.00596	6.27353	HepG2	GRWD1
chr11	14515755	14515793	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.14280	4.58595	K562	SND1
chr11	14515761	14515898	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.20319	4.60670	K562	FXR2
chr11	14490881	14490918	-	CDS,intron-Distal,intron-Proximal	4.01565	3.25205	K562	GRWD1
chr11	14490250	14490293	-	CDS,intron-Distal	3.45251	5.77413	K562	DDX24
chr11	14515190	14515239	-	CDS,intron-Distal,intron-Proximal	4.68273	4.98634	K562	METAP2
chr11	14520353	14520404	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.61414	4.21433	K562	PRPF8
chr11	14520909	14520951	-	intron-Distal	4.93925	30.48265	K562	CSTF2T
chr11	14521012	14521124	-	intron-Distal	4.00885	4.74035	K562	FUS
chr11	14521068	14521133	-	intron-Distal	4.04875	4.90219	HepG2	AQR
chr11	14521048	14521128	-	intron-Distal	3.70277	3.41462	K562	EWSR1
chr11	14520951	14520990	-	intron-Distal	4.75906	25.53403	K562	CSTF2T
chr11	14520930	14520990	-	intron-Distal	4.31962	11.56505	HepG2	PCBP2
chr11	14521070	14521121	-	intron-Distal	3.13036	5.75838	K562	PRPF8
chr11	14521039	14521137	-	intron-Distal	3.27194	14.56814	K562	AQR
chr11	14521027	14521065	-	intron-Distal	5.02293	8.30587	HepG2	PRPF4
chr11	14520926	14520985	-	intron-Distal	5.00489	14.01912	HepG2	GTF2F1
chr11	14521059	14521130	-	intron-Distal	7.87385	58.46593	K562	GTF2F1
chr11	14521037	14521058	-	intron-Distal	3.46154	4.76898	K562	CSTF2T
chr11	14521076	14521123	-	intron-Distal	3.83174	4.71435	K562	NCBP2
chr11	14521012	14521124	-	intron-Distal	3.67103	31.47792	K562	DROSHA
chr11	14521072	14521117	-	intron-Distal	3.69294	4.42591	K562	DDX52
chr11	14520931	14520977	-	intron-Distal	3.72035	3.21433	HepG2	TAF15
chr11	14521073	14521129	-	intron-Distal	5.76666	9.00303	HepG2	PCBP2
chr11	14497502	14497541	-	intron-Distal,intron-Proximal	5.36965	6.40247	K562	SF3B4
chr11	14481712	14481753	-	intron-Distal,intron-Proximal	4.89234	5.17615	K562	AQR
chr11	14482651	14482730	-	intron-Distal,intron-Proximal	5.55949	8.34710	K562	AQR
chr11	14521055	14521123	-	intron-Distal	4.43117	8.44359	HepG2	EFTUD2
chr11	14517735	14517804	-	intron-Distal	3.07578	4.06979	K562	KHSRP
chr11	14520924	14521000	-	intron-Distal	4.41671	9.78791	K562	GTF2F1
chr11	14520544	14520558	-	intron-Distal,intron-Proximal	5.35879	8.52787	K562	AQR
chr11	14519541	14519631	-	intron-Distal	3.31554	5.93885	HepG2	QKI
chr11	14502185	14502227	-	intron-Distal,intron-Proximal	4.13142	3.31283	K562	PRPF8
chr11	14490805	14490859	-	intron-Distal,intron-Proximal	4.06696	10.92716	K562	AQR
chr11	14521065	14521138	-	intron-Distal	5.70660	40.80239	HepG2	PRPF4
chr11	14520752	14520855	-	intron-Distal	3.15337	8.25852	K562	KHSRP
chr11	14521068	14521125	-	intron-Distal	3.89979	3.39169	HepG2	HNRNPU
chr11	14521040	14521128	-	intron-Distal	4.32313	13.77966	HepG2	CSTF2T
chr11	14481011	14481149	-	intron-Distal	3.64652	7.21887	K562	KHSRP
chr11	14497287	14497331	-	intron-Distal,intron-Proximal	3.94234	7.30031	K562	AQR
chr11	14521058	14521132	-	intron-Distal	4.11888	32.05223	HepG2	FAM120A
chr11	14500968	14501069	-	intron-Distal,intron-Proximal	3.91959	3.19904	K562	TIA1
chr11	14521055	14521123	-	intron-Distal	3.86343	12.60854	K562	FASTKD2
chr11	14520968	14521020	-	intron-Distal	4.51446	11.61767	HepG2	PRPF4
chr11	14521075	14521129	-	intron-Distal	6.66550	25.59224	HepG2	GTF2F1
chr11	14520934	14520968	-	intron-Distal	3.89752	10.88971	HepG2	PRPF4
chr11	14520930	14521006	-	intron-Distal	3.45843	9.47641	HepG2	CSTF2T
chr11	14521058	14521130	-	intron-Distal	4.50060	29.28265	K562	CSTF2T
chr11	14519544	14519631	-	intron-Distal	5.00768	5.51743	K562	QKI
chr11	14490144	14490218	-	intron-Distal,intron-Proximal	4.37133	5.97994	K562	AQR
chr11	14520755	14520792	-	intron-Distal	3.13664	3.29499	HepG2	PRPF4
chr11	14517812	14517865	-	intron-Distal	3.24522	5.42680	K562	KHSRP
chr11	14507868	14507913	-	intron-Distal,intron-Proximal	4.01187	5.83621	K562	AQR
chr11	14521079	14521125	-	intron-Distal	3.16933	3.54163	HepG2	DGCR8
chr11	14521009	14521126	-	intron-Distal	3.30994	8.57230	HepG2	DROSHA
chr11	14521058	14521127	-	intron-Distal	4.38020	5.68632	K562	DDX6
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for COPB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for COPB1 is not available on ENCORE database.
99 RBPs can affect the levels of COPB1.

The Knockdown/knockout RNA-Seq assay for COPB1 is not available on ENCORE database.

99 RBPs can affect the gene expression of COPB1 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
COPB1	ENSG00000129083.8	3400.16440	3975.96910	-0.22570	3.58200	2.90640	HepG2	ACO1
COPB1	ENSG00000129083.8	2217.96810	3207.08620	-0.53200	6.21040	4.79470	HepG2	ADAR
COPB1	ENSG00000129083.8	2062.68850	2498.42980	-0.27650	2.17190	1.63670	HepG2	BOP1
COPB1	ENSG00000129083.8	3655.00310	3017.63820	0.27640	2.98200	2.18300	HepG2	CALR
COPB1	ENSG00000129083.8	3465.72320	4584.26000	-0.40350	2.72200	1.75620	HepG2	CCAR1
COPB1	ENSG00000129083.8	3378.08820	3975.13740	-0.23480	4.29060	3.49650	HepG2	CKAP4
COPB1	ENSG00000129083.8	2484.23340	3413.48020	-0.45840	2.49250	1.77030	HepG2	CNOT7
COPB1	ENSG00000129083.8	2208.95540	2785.84760	-0.33480	3.27800	2.07420	HepG2	CPSF7
COPB1	ENSG00000129083.8	1614.76200	2189.47440	-0.43930	3.96290	2.70180	HepG2	CSTF2
COPB1	ENSG00000129083.8	2861.43170	3677.21670	-0.36190	8.32320	7.01390	HepG2	DDX19B
COPB1	ENSG00000129083.8	2958.76450	3803.93340	-0.36250	7.00330	6.01980	HepG2	DKC1
COPB1	ENSG00000129083.8	2564.00190	3200.78780	-0.32000	6.90860	5.94330	HepG2	DNAJC2
COPB1	ENSG00000129083.8	4877.97620	4053.21280	0.26710	1.83860	1.34240	HepG2	EIF2S1
COPB1	ENSG00000129083.8	4953.80800	6615.15230	-0.41720	10.18150	9.14700	HepG2	ETF1
COPB1	ENSG00000129083.8	3193.63550	3885.26090	-0.28280	2.73630	1.90530	HepG2	EWSR1
COPB1	ENSG00000129083.8	2797.61790	2187.92620	0.35450	3.72880	2.82460	HepG2	FUBP3
COPB1	ENSG00000129083.8	1542.36700	1904.54860	-0.30430	2.12480	1.34450	HepG2	GEMIN5
COPB1	ENSG00000129083.8	3093.46260	3795.93190	-0.29520	4.88820	3.62730	HepG2	HDGF
COPB1	ENSG00000129083.8	2756.41630	3260.37670	-0.24220	2.02220	1.45960	HepG2	HNRNPA1
COPB1	ENSG00000129083.8	2381.31070	3626.52160	-0.60680	9.46540	8.24630	HepG2	HNRNPC
COPB1	ENSG00000129083.8	3129.97470	3617.05220	-0.20870	2.67070	1.96490	HepG2	HNRNPF
COPB1	ENSG00000129083.8	4525.54260	4994.28770	-0.14220	2.10410	1.50610	HepG2	HNRNPL
COPB1	ENSG00000129083.8	1703.85390	3602.54860	-1.08020	53.13640	50.76520	HepG2	HNRNPU
COPB1	ENSG00000129083.8	3660.51440	4546.13250	-0.31260	2.08550	1.53280	HepG2	MATR3
COPB1	ENSG00000129083.8	4160.88310	5436.58370	-0.38580	6.24250	5.10040	HepG2	NOL12
COPB1	ENSG00000129083.8	4491.44100	3119.88010	0.52560	2.87410	1.96780	HepG2	PABPC1
COPB1	ENSG00000129083.8	2871.90750	3565.96210	-0.31230	5.21270	4.09770	HepG2	PARN
COPB1	ENSG00000129083.8	1466.79220	1768.92740	-0.27020	2.46650	1.30950	HepG2	PKM
COPB1	ENSG00000129083.8	2361.88750	3213.19320	-0.44410	7.97730	6.77540	HepG2	PPIL4
COPB1	ENSG00000129083.8	2292.22700	2635.06930	-0.20110	2.23790	1.53510	HepG2	PRPF4
COPB1	ENSG00000129083.8	3727.55990	4314.93220	-0.21110	2.54260	2.01430	HepG2	PTBP1
COPB1	ENSG00000129083.8	3836.44370	5189.68390	-0.43590	5.91510	5.08770	HepG2	PUF60
COPB1	ENSG00000129083.8	4237.99360	5509.06550	-0.37840	12.01760	10.96480	HepG2	PUM1
COPB1	ENSG00000129083.8	2804.66880	4049.78720	-0.53000	16.60610	15.32260	HepG2	PUS1
COPB1	ENSG00000129083.8	3921.02280	4673.02490	-0.25310	2.96520	2.32260	HepG2	QKI
COPB1	ENSG00000129083.8	3859.76100	5529.02860	-0.51850	12.53220	11.59110	HepG2	RBM22
COPB1	ENSG00000129083.8	5549.38440	4241.12830	0.38780	3.88540	3.09710	HepG2	RBM25
COPB1	ENSG00000129083.8	3921.72490	4802.04550	-0.29220	5.01150	4.31920	HepG2	NELFE
COPB1	ENSG00000129083.8	3807.86430	4472.56120	-0.23210	3.43020	2.75320	HepG2	RECQL
COPB1	ENSG00000129083.8	2552.26240	3896.55090	-0.61040	9.57360	8.42860	HepG2	RPLP0
COPB1	ENSG00000129083.8	1384.69520	2081.35760	-0.58800	8.57270	7.56250	HepG2	RPS19
COPB1	ENSG00000129083.8	2883.15630	3533.45140	-0.29340	2.01930	1.32830	HepG2	RPS2
COPB1	ENSG00000129083.8	2863.11280	3208.25510	-0.16420	2.06850	1.49850	HepG2	SAFB2
COPB1	ENSG00000129083.8	2446.33100	3741.41200	-0.61300	25.96030	24.31740	HepG2	SMN1
COPB1	ENSG00000129083.8	5215.14590	6244.80850	-0.25990	4.96990	4.35340	HepG2	SRFBP1
COPB1	ENSG00000129083.8	5998.11740	4689.01250	0.35510	8.72960	7.99620	HepG2	SRSF1
COPB1	ENSG00000129083.8	3822.16740	5124.04120	-0.42290	10.27240	9.16880	HepG2	SRSF5
COPB1	ENSG00000129083.8	3037.21010	3553.65720	-0.22660	3.15370	2.41620	HepG2	SRSF7
COPB1	ENSG00000129083.8	3317.65970	3814.80670	-0.20140	2.78440	2.23150	HepG2	SRSF9
COPB1	ENSG00000129083.8	2387.67350	3176.86580	-0.41200	3.14790	1.78350	HepG2	SSRP1
COPB1	ENSG00000129083.8	2249.14520	2981.52600	-0.40670	2.63320	1.56380	HepG2	STIP1
COPB1	ENSG00000129083.8	4590.74070	5827.45990	-0.34410	9.27580	8.25100	HepG2	SUCLG1
COPB1	ENSG00000129083.8	2881.28210	4214.81330	-0.54880	12.48850	11.42620	HepG2	TAF15
COPB1	ENSG00000129083.8	2088.21460	3500.71650	-0.74540	17.99360	16.92280	HepG2	TIAL1
COPB1	ENSG00000129083.8	2506.63430	3449.79270	-0.46080	2.93920	1.42910	HepG2	TRA2A
COPB1	ENSG00000129083.8	2406.33310	3531.83060	-0.55360	15.25770	14.08300	HepG2	TRIM56
COPB1	ENSG00000129083.8	4056.70340	5070.08000	-0.32170	3.74630	2.71480	HepG2	TUFM
COPB1	ENSG00000129083.8	4041.34050	2921.97260	0.46780	5.30630	4.45180	HepG2	U2AF1
COPB1	ENSG00000129083.8	1337.95740	2049.28890	-0.61510	6.46870	5.30110	HepG2	UCHL5
COPB1	ENSG00000129083.8	3116.10340	3574.42360	-0.19800	2.26860	1.30680	HepG2	UTP18
COPB1	ENSG00000129083.8	2347.62080	3357.45360	-0.51620	13.74230	12.55940	HepG2	UTP3
COPB1	ENSG00000129083.8	2493.30200	3414.67070	-0.45370	3.80960	2.96750	HepG2	XRN2
COPB1	ENSG00000129083.8	2481.20720	3432.50590	-0.46820	3.26070	1.84110	HepG2	ZRANB2
COPB1	ENSG00000129083.8	10447.53960	8193.83870	0.35050	4.38210	3.69690	K562	AGGF1
COPB1	ENSG00000129083.8	11429.94800	9004.38880	0.34400	3.86220	2.65910	K562	AKAP8
COPB1	ENSG00000129083.8	12024.70720	8526.20790	0.49590	7.67920	6.54210	K562	AKAP8L
COPB1	ENSG00000129083.8	6861.57130	8371.16650	-0.28690	3.42270	2.03500	K562	APOBEC3C
COPB1	ENSG00000129083.8	11667.38670	8946.32280	0.38300	6.06220	4.64360	K562	ATP5C1
COPB1	ENSG00000129083.8	3309.96410	2544.54610	0.37930	3.44730	2.47420	K562	BOP1
COPB1	ENSG00000129083.8	1463.55530	2009.73420	-0.45750	2.96630	1.86830	K562	CCAR1
COPB1	ENSG00000129083.8	3303.76290	2705.58070	0.28810	3.03310	2.21290	K562	CPSF6
COPB1	ENSG00000129083.8	13988.13860	11667.49880	0.26160	2.88690	1.89170	K562	CELF1
COPB1	ENSG00000129083.8	1560.04220	2249.69170	-0.52810	3.87290	2.25080	K562	DHX30
COPB1	ENSG00000129083.8	11183.08760	9173.88690	0.28560	4.03890	2.95380	K562	DKC1
COPB1	ENSG00000129083.8	3826.13120	4945.99850	-0.37040	5.93750	4.78500	K562	EIF3G
COPB1	ENSG00000129083.8	5324.71970	7170.40750	-0.42930	2.40450	1.63780	K562	EIF4A3
COPB1	ENSG00000129083.8	7903.36370	9487.36710	-0.26350	4.65280	3.44730	K562	EIF4G2
COPB1	ENSG00000129083.8	7082.96160	5291.39070	0.42060	3.70220	1.83200	K562	FASTKD2
COPB1	ENSG00000129083.8	7015.23310	4372.47370	0.68190	4.12250	2.44080	K562	FUS
COPB1	ENSG00000129083.8	3722.53980	7456.96600	-1.00230	17.64550	16.22820	K562	FXR1
COPB1	ENSG00000129083.8	11523.14380	7823.16440	0.55860	2.60640	1.92350	K562	G3BP2
COPB1	ENSG00000129083.8	4034.29440	2583.16230	0.64310	10.79720	9.20610	K562	GPKOW
COPB1	ENSG00000129083.8	3010.86970	3775.20920	-0.32640	3.59130	2.92280	K562	HNRNPC
COPB1	ENSG00000129083.8	12052.19450	9047.92140	0.41350	6.24900	4.89530	K562	KIF1C
COPB1	ENSG00000129083.8	2936.29790	2205.70230	0.41270	2.71690	1.79360	K562	KRR1
COPB1	ENSG00000129083.8	5344.95570	8772.33830	-0.71480	14.70410	12.65320	K562	MAGOH
COPB1	ENSG00000129083.8	11052.21570	8661.50590	0.35150	3.77360	2.45350	K562	MAK16
COPB1	ENSG00000129083.8	6652.65920	8754.90660	-0.39620	5.50200	4.13860	K562	MATR3
COPB1	ENSG00000129083.8	3193.21520	2521.45530	0.34070	3.41700	2.43970	K562	METAP2
COPB1	ENSG00000129083.8	12480.47980	10112.25270	0.30350	2.74990	1.62490	K562	MSI2
COPB1	ENSG00000129083.8	10012.67080	7104.66800	0.49490	2.97760	2.05650	K562	NAA15
COPB1	ENSG00000129083.8	6111.42120	7805.64670	-0.35300	3.78340	2.63950	K562	PCBP2
COPB1	ENSG00000129083.8	2564.52600	3075.80490	-0.26230	2.65870	1.87540	K562	POLR2G
COPB1	ENSG00000129083.8	4543.27420	8522.69680	-0.90760	20.94510	19.19100	K562	PTBP1
COPB1	ENSG00000129083.8	8964.46850	10787.62420	-0.26710	4.81620	3.53640	K562	PUM2
COPB1	ENSG00000129083.8	10996.53880	8454.60620	0.37910	4.13220	3.48820	K562	PUS1
COPB1	ENSG00000129083.8	11492.40830	8238.61230	0.48010	9.58700	8.50720	K562	RBM15
COPB1	ENSG00000129083.8	5760.29320	8173.55890	-0.50480	6.95000	5.54670	K562	RBM22
COPB1	ENSG00000129083.8	9397.76540	7416.97760	0.34140	3.53460	2.00770	K562	RBM25
COPB1	ENSG00000129083.8	5149.68480	8601.05690	-0.74000	10.85740	8.65090	K562	NELFE
COPB1	ENSG00000129083.8	4270.59530	3432.17670	0.31520	2.30840	1.56490	K562	RPS19
COPB1	ENSG00000129083.8	3758.29080	5905.90210	-0.65210	4.45080	3.14260	K562	RPS3
COPB1	ENSG00000129083.8	1961.37790	2740.33340	-0.48250	6.32370	4.69350	K562	SAFB
COPB1	ENSG00000129083.8	2394.28980	2927.91400	-0.29030	2.47950	1.52040	K562	SRFBP1
COPB1	ENSG00000129083.8	6275.13930	8354.81500	-0.41300	6.21700	5.16670	K562	SRSF1
COPB1	ENSG00000129083.8	3916.84270	5702.30240	-0.54190	4.24180	2.89570	K562	SRSF4
COPB1	ENSG00000129083.8	6499.27140	5101.75430	0.34920	5.77590	3.80030	K562	SSB
COPB1	ENSG00000129083.8	5004.81970	3985.88450	0.32830	2.72710	1.48740	K562	STAU1
COPB1	ENSG00000129083.8	2330.93420	3084.98790	-0.40440	5.45410	4.29380	K562	SYNCRIP
COPB1	ENSG00000129083.8	6018.73270	4787.26700	0.33020	6.81210	4.78590	K562	TROVE2
COPB1	ENSG00000129083.8	10730.93850	7579.64390	0.50150	3.62970	2.34050	K562	U2AF1
COPB1	ENSG00000129083.8	10215.82340	7829.28200	0.38380	5.91760	4.74390	K562	U2AF2
COPB1	ENSG00000129083.8	4518.85070	3452.81590	0.38810	3.68180	2.49120	K562	UCHL5
COPB1	ENSG00000129083.8	6326.20050	5102.99290	0.30990	6.84710	5.77270	K562	UPF1
COPB1	ENSG00000129083.8	12459.60710	8573.15420	0.53930	2.87710	1.55250	K562	UTP18
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for COPB1 is not available on ENCORE database.

2 RBPs can affect the splicing of COPB1 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	COPB1	ENSG00000129083.8	chr11	-	14498464	14498604			14498464	14498561	14501114	14501363	0.09300	0.00000	0.00000	longer	K562	AQR
A3SS	COPB1	ENSG00000129083.8	chr11	-	14481753	14481979			14481753	14481843	14482731	14482920	0.06100	0.00000	0.00000	longer	K562	AQR
A3SS	COPB1	ENSG00000129083.8	chr11	-	14482731	14482965			14482731	14482877	14486456	14486576	0.08700	0.00000	0.00000	longer	K562	AQR
A3SS	COPB1	ENSG00000129083.8	chr11	-	14520383	14520603			14520383	14520531	14521252	14521441	0.07000	0.00002	0.00018	longer	K562	AQR
MXE	COPB1	ENSG00000129083.8	chr11	-	14481753	14481843	14482731	14482877	14480077	14480233	14486456	14486576	0.12800	0.00004	0.00401	1included	K562	TAF15

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
COPB1	Product_ID: A304-723A Lot_ID: 1 Source: Bethyl Labs Target Name: COPB1-human
COPB1	Product_ID: A304-724A Lot_ID: 1 Source: Bethyl Labs Target Name: COPB1-human

COPB1

General Information

Functions

Localization

Domains (AlphaFold: COPB1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for COPB1 is not avaliable on ENCORE database.

48 proteins are bound to COPB1 RNA:

eCLIP assay for COPB1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for COPB1 is not available on ENCORE database.

99 RBPs can affect the gene expression of COPB1 :

The Knockdown/knockout RNA-Seq assay for COPB1 is not available on ENCORE database.

2 RBPs can affect the splicing of COPB1 :

The Knockdown/knockout RNA-Seq assay for COPB1 is not avaliable on ENCORE database.