COL9A3

General Information

Gene Name : COL9A3
Gene ID : ENSG00000092758.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: COL9A3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	COL9A3	ENSG00000092758.17	0.08	0.14	0.11	ENCSR000AEF
HepG2	COL9A3	ENSG00000092758.17	111.31	24.39	67.85	ENCSR985KAT
K562	COL9A3	ENSG00000092758.17	0.55	0.32	0.44	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for COL9A3 is not avaliable on ENCORE database.

Proteins bound to RNA

COL9A3 RNA is bound by 41 proteins.

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eCLIP assay for COL9A3 is not avaliable on ENCORE database.

41 proteins are bound to COL9A3 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr20	61451287	61451313	+	CDS	4.69252	400.00000	HepG2	PPIG
chr20	61460984	61461033	+	CDS	4.30205	400.00000	HepG2	PPIG
chr20	61459277	61459328	+	CDS	4.46635	400.00000	HepG2	PPIG
chr20	61451313	61451331	+	CDS	4.43322	400.00000	HepG2	PPIG
chr20	61461141	61461168	+	CDS	4.13434	78.17862	HepG2	PPIG
chr20	61458122	61458172	+	CDS	3.95309	75.80930	HepG2	PPIG
chr20	61461121	61461141	+	CDS	4.26264	70.38006	HepG2	PPIG
chr20	61452536	61452564	+	CDS	3.68122	67.41688	HepG2	PPIG
chr20	61451331	61451334	+	CDS	4.05448	64.32017	HepG2	PPIG
chr20	61456514	61456601	+	intron-Distal	7.16467	64.26546	HepG2	FAM120A
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 351 entries

eCLIP assay for COL9A3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for COL9A3 is not available on ENCORE database.
93 RBPs can affect the levels of COL9A3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for COL9A3 is not available on ENCORE database.

93 RBPs can affect the gene expression of COL9A3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
COL9A3	ENSG00000092758.11	2771.31450	956.16230	1.53510	108.84910	106.12460	HepG2	SMN1
COL9A3	ENSG00000092758.11	1951.82150	818.02800	1.25450	61.76210	58.98600	HepG2	DNAJC2
COL9A3	ENSG00000092758.11	5718.76020	1950.30390	1.55190	34.46570	32.84750	HepG2	PUM1
COL9A3	ENSG00000092758.11	3143.66170	821.17980	1.93660	34.94830	32.60250	HepG2	PPIL4
COL9A3	ENSG00000092758.11	819.40020	4367.77690	-2.41430	30.01260	28.73350	HepG2	SSB
COL9A3	ENSG00000092758.11	4124.46980	1767.76530	1.22220	26.21140	24.36890	HepG2	HNRNPL
COL9A3	ENSG00000092758.11	4906.51690	1814.02710	1.43540	25.72300	24.08780	HepG2	SRSF5
COL9A3	ENSG00000092758.11	3682.29950	1805.21240	1.02830	25.39150	23.84860	HepG2	CELF1
COL9A3	ENSG00000092758.11	3022.26760	4640.65050	-0.61870	19.76970	18.34320	HepG2	DKC1
COL9A3	ENSG00000092758.11	3782.09370	1875.03580	1.01220	18.37380	17.03180	HepG2	PCBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 96 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for COL9A3 is not available on ENCORE database.

27 RBPs can affect the splicing of COL9A3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	COL9A3	ENSG00000092758.11	chr20	+	61467829	61467884			61467538	61467685	61468434	61468617	-0.08300	0.00000	excluded	HepG2	SF3B4
RI	COL9A3	ENSG00000092758.11	chr20	+	61467538	61467884			61467538	61467685	61467829	61467884	-0.09300	0.00000	excluded	HepG2	HNRNPL
RI	COL9A3	ENSG00000092758.11	chr20	+	61467538	61467884			61467538	61467685	61467829	61467884	0.23000	0.00006	included	HepG2	U2AF2
RI	COL9A3	ENSG00000092758.11	chr20	+	61467538	61467884			61467538	61467685	61467829	61467884	0.08900	0.00000	included	HepG2	PRPF4
RI	COL9A3	ENSG00000092758.11	chr20	+	61467538	61467884			61467538	61467685	61467829	61467884	-0.10600	0.00000	excluded	HepG2	NOL12
RI	COL9A3	ENSG00000092758.11	chr20	+	61467538	61467884			61467538	61467685	61467829	61467884	0.07900	0.00002	included	HepG2	SRSF1
RI	COL9A3	ENSG00000092758.11	chr20	+	61467538	61467884			61467538	61467685	61467829	61467884	0.10100	0.00000	included	HepG2	TAF15
RI	COL9A3	ENSG00000092758.11	chr20	+	61467538	61467884			61467538	61467685	61467829	61467884	0.10500	0.00000	included	HepG2	U2AF1
MXE	COL9A3	ENSG00000092758.11	chr20	+	61448918	61448987	61449869	61449905	61448413	61448494	61450573	61450645	0.24100	0.00029	1included	HepG2	NCBP2
MXE	COL9A3	ENSG00000092758.11	chr20	+	61467538	61467685	61467829	61467884	61467272	61467305	61468434	61468617	0.20200	0.00013	1included	HepG2	TIAL1

Showing 1 to 10 of 50 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

COL9A3

General Information

Functions

Localization

Domains (AlphaFold: COL9A3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for COL9A3 is not avaliable on ENCORE database.

41 proteins are bound to COL9A3 RNA:

eCLIP assay for COL9A3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for COL9A3 is not available on ENCORE database.

93 RBPs can affect the gene expression of COL9A3 :

The Knockdown/knockout RNA-Seq assay for COL9A3 is not available on ENCORE database.

27 RBPs can affect the splicing of COL9A3 :

The Knockdown/knockout RNA-Seq assay for COL9A3 is not avaliable on ENCORE database.