CCBL1

General Information

Gene Name       : CCBL1
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCBL1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCBL1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCBL1 RNA is bound by 14 proteins.  







eCLIP assay for CCBL1 is not avaliable on ENCORE database.





14 proteins are bound to CCBL1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr9131607634131607687-3'-UTR,5'-UTR,CDS,intron-Distal3.184424.63108HepG2PPIG
chr9131595811131595872-3'-UTR,CDS,intron-Distal3.052824.65667HepG2PPIG
chr9131595743131595794-3'-UTR,intron-Distal3.598113.03452HepG2U2AF2
chr9131595620131595700-3'-UTR,intron-Distal3.268675.90285HepG2PRPF8
chr9131644141131644226-5'-UTR,intron-Distal,intron-Proximal4.177554.77154HepG2NCBP2
chr9131600062131600093-CDS,intron-Distal,intron-Proximal3.192765.60182HepG2BCLAF1
chr9131600063131600092-CDS,intron-Distal4.7849910.78364HepG2PPIG
chr9131599085131599111-CDS,intron-Distal3.893964.13746HepG2PPIG
chr9131597627131597679-CDS,intron-Distal,intron-Proximal4.302157.55042HepG2PPIG
chr9131600353131600394-CDS,intron-Distal4.531788.09084HepG2PPIG
chr9131598320131598349-CDS,intron-Distal3.056455.77687HepG2PPIG
chr9131597600131597627-CDS,intron-Distal,intron-Proximal3.354165.08732HepG2PPIG
chr9131595872131595921-CDS,intron-Distal,intron-Proximal3.827166.41974HepG2PPIG
chr9131600328131600353-CDS,intron-Distal,intron-Proximal5.0204212.29445HepG2PPIG
chr9131596035131596099-CDS,intron-Distal3.310033.72729HepG2GRWD1
chr9131599132131599215-CDS,intron-Distal,intron-Proximal3.775873.00996K562BUD13
chr9131597939131598003-CDS,intron-Distal,intron-Proximal4.238114.76597HepG2EFTUD2
chr9131600174131600210-intron-Distal,intron-Proximal4.881695.98353HepG2EFTUD2
chr9131600132131600257-intron-Distal,intron-Proximal3.560644.36184HepG2PRPF4
chr9131595929131595998-intron-Distal,intron-Proximal4.141153.00258HepG2RBM5
chr9131609625131609685-intron-Distal,intron-Proximal5.203686.36553HepG2RBFOX2
chr9131600099131600147-intron-Distal,intron-Proximal6.080366.68817HepG2EFTUD2
chr9131606290131606368-intron-Distal4.347923.06853K562LIN28B
chr9131607535131607603-intron-Distal,intron-Proximal4.556838.11292HepG2EFTUD2
chr9131617005131617111-intron-Distal3.727453.19026HepG2HNRNPL
chr9131627443131627512-intron-Distal3.960637.06316HepG2ILF3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCBL1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCBL1 is not available on ENCORE database.

  • 134 RBPs can affect the levels of CCBL1.  








The Knockdown/knockout RNA-Seq assay for CCBL1 is not available on ENCORE database.





134 RBPs can affect the gene expression of CCBL1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCBL1ENSG00000171097.9234.38950549.84700-1.2301021.9499020.60550HepG2ACO1
CCBL1ENSG00000171097.9349.04260572.43930-0.713704.316701.35470HepG2AGGF1
CCBL1ENSG00000171097.9236.597101018.21100-2.1055038.2449036.58500HepG2AKAP1
CCBL1ENSG00000171097.9248.14190552.38880-1.1545018.8670017.11870HepG2AKAP8L
CCBL1ENSG00000171097.9346.40930842.45400-1.2821018.0125016.21870HepG2ASCC1
CCBL1ENSG00000171097.9403.08530218.005900.886605.743804.49980HepG2BCLAF1
CCBL1ENSG00000171097.9217.61530125.275300.796603.925003.22480HepG2BOP1
CCBL1ENSG00000171097.9209.61350549.67750-1.3909027.4047025.80460HepG2CKAP4
CCBL1ENSG00000171097.9187.88200115.004500.708002.838902.14370HepG2CPSF6
CCBL1ENSG00000171097.9371.47390522.30760-0.491603.907703.16760HepG2CELF1
CCBL1ENSG00000171097.9810.42160561.545000.529207.772806.62130HepG2DAZAP1
CCBL1ENSG00000171097.9247.13130508.50670-1.0410017.0900015.42460HepG2DDX19B
CCBL1ENSG00000171097.9209.42910372.15400-0.829406.259305.28750HepG2DDX21
CCBL1ENSG00000171097.9236.13350364.56110-0.626603.987302.87830HepG2DDX24
CCBL1ENSG00000171097.9127.64100230.81330-0.854603.780202.30600HepG2DDX27
CCBL1ENSG00000171097.9482.62790975.30430-1.0149012.4682011.22920HepG2DDX3X
CCBL1ENSG00000171097.9586.59950837.95920-0.514503.432202.75230HepG2DDX6
CCBL1ENSG00000171097.9512.78220271.444800.917603.216202.16250HepG2DHX30
CCBL1ENSG00000171097.9346.57880526.04170-0.602005.790804.87670HepG2DKC1
CCBL1ENSG00000171097.9380.96840281.434200.436802.771902.06840HepG2DNAJC21
CCBL1ENSG00000171097.9167.49620391.37530-1.2244010.852309.18260HepG2EEF2
CCBL1ENSG00000171097.9194.97690326.22470-0.742604.707803.26120HepG2EFTUD2
CCBL1ENSG00000171097.9200.50210343.01980-0.774704.368202.96320HepG2AGO1
CCBL1ENSG00000171097.91093.91160805.399100.441603.175102.54190HepG2EIF2S1
CCBL1ENSG00000171097.9218.37590372.54960-0.770603.307402.02190HepG2EIF2S2
CCBL1ENSG00000171097.9192.06090317.68230-0.726003.989902.91480HepG2EIF3D
CCBL1ENSG00000171097.9236.51630351.69270-0.572403.516702.31670HepG2EIF3G
CCBL1ENSG00000171097.9464.31370889.98740-0.938709.701808.51790HepG2EIF4A3
CCBL1ENSG00000171097.9338.32720866.66740-1.3571014.7565013.24220HepG2EIF4B
CCBL1ENSG00000171097.9872.65670530.738100.717304.738903.69030HepG2EIF4G2
CCBL1ENSG00000171097.9352.15490574.24390-0.705508.321107.37560HepG2ETF1
CCBL1ENSG00000171097.9244.56700537.25440-1.1354014.7108012.87450HepG2EWSR1
CCBL1ENSG00000171097.9145.09700496.14940-1.773807.007005.84010HepG2FIP1L1
CCBL1ENSG00000171097.9362.22000525.40800-0.536603.153501.38850HepG2FMR1
CCBL1ENSG00000171097.9894.24480637.604900.487904.226003.26520HepG2FUBP3
CCBL1ENSG00000171097.9244.85240381.44100-0.639503.175001.97750HepG2FUS
CCBL1ENSG00000171097.9356.05110898.18160-1.3349019.7646018.09830HepG2FXR1
CCBL1ENSG00000171097.9571.10880833.07860-0.544704.008203.21540HepG2G3BP1
CCBL1ENSG00000171097.9124.35190282.84700-1.185609.423507.81970HepG2GEMIN5
CCBL1ENSG00000171097.9205.89640365.18730-0.826704.570903.25710HepG2GNB2L1
CCBL1ENSG00000171097.9222.61740365.92550-0.717003.097101.63030HepG2HLTF
CCBL1ENSG00000171097.9120.19090284.13050-1.241209.188708.11100HepG2HNRNPA1
CCBL1ENSG00000171097.9366.00200176.770901.0499010.798709.50380HepG2HNRNPF
CCBL1ENSG00000171097.9516.43600843.83970-0.708406.993505.91910HepG2HNRNPK
CCBL1ENSG00000171097.9667.54060511.505100.384003.008602.30880HepG2HNRNPL
CCBL1ENSG00000171097.9424.27550124.399201.7699016.8503015.48500HepG2HNRNPLL
CCBL1ENSG00000171097.9158.66580342.14310-1.108605.013103.77140HepG2HNRNPM
CCBL1ENSG00000171097.9553.01680935.98800-0.759206.390104.54590HepG2HSPD1
CCBL1ENSG00000171097.9323.46930174.065300.893906.754005.66760HepG2IGF2BP1
CCBL1ENSG00000171097.9413.46640846.76470-1.0342012.7933011.46270HepG2IGF2BP2
CCBL1ENSG00000171097.9275.83220794.81920-1.526808.211106.59010HepG2IGF2BP3
CCBL1ENSG00000171097.9627.78330851.77810-0.440202.428401.50060HepG2KHSRP
CCBL1ENSG00000171097.9194.40530448.51150-1.206109.983708.40540HepG2LARP4
CCBL1ENSG00000171097.9231.68380357.71390-0.626603.621102.32120HepG2LARP7
CCBL1ENSG00000171097.9233.09890375.68330-0.688604.224802.72020HepG2LIN28B
CCBL1ENSG00000171097.9315.97760898.49620-1.5077023.9341022.12140HepG2MAGOH
CCBL1ENSG00000171097.9199.61940302.98380-0.602003.020701.33530HepG2MARK2
CCBL1ENSG00000171097.9195.58130903.48890-2.2077040.4509038.26540HepG2MATR3
CCBL1ENSG00000171097.9111.13680332.46390-1.580909.564307.73980HepG2METAP2
CCBL1ENSG00000171097.9237.77640126.901300.905803.839002.68560HepG2MTPAP
CCBL1ENSG00000171097.9374.24860924.74180-1.3051018.5253016.98300HepG2NCBP2
CCBL1ENSG00000171097.9181.90180110.313700.721402.651601.91890HepG2NSUN2
CCBL1ENSG00000171097.9122.58490310.75900-1.3420014.5908012.90380HepG2PARN
CCBL1ENSG00000171097.9371.97610919.09700-1.3050032.6906031.00360HepG2PCBP1
CCBL1ENSG00000171097.9201.71390361.06290-0.839904.787103.44760HepG2PCBP2
CCBL1ENSG00000171097.9611.45870909.22650-0.572404.269202.03140HepG2PPIG
CCBL1ENSG00000171097.9345.12520238.812700.531103.792902.90060HepG2PRPF4
CCBL1ENSG00000171097.9211.05060379.54140-0.846704.725603.16820HepG2PRPF6
CCBL1ENSG00000171097.9113.63290190.26900-0.743703.060502.21440HepG2PRPF8
CCBL1ENSG00000171097.9222.82640408.32370-0.873803.705101.65440HepG2PSIP1
CCBL1ENSG00000171097.9262.51490935.23950-1.8329056.0449054.28140HepG2PTBP1
CCBL1ENSG00000171097.9369.86160531.56100-0.523203.595602.92740HepG2PUF60
CCBL1ENSG00000171097.9295.61510564.29620-0.9327014.0804012.95920HepG2PUM1
CCBL1ENSG00000171097.9231.92880563.87110-1.2817018.1507016.52860HepG2PUM2
CCBL1ENSG00000171097.9324.38820560.04750-0.7878010.621609.54920HepG2PUS1
CCBL1ENSG00000171097.9713.965701012.83650-0.504505.572804.73290HepG2QKI
CCBL1ENSG00000171097.9145.28920348.35410-1.261607.174406.06820HepG2RAVER1
CCBL1ENSG00000171097.9113.00530479.96270-2.0865035.3666033.91720HepG2RBM22
CCBL1ENSG00000171097.9533.78000919.23350-0.7842010.235108.99800HepG2RBM25
CCBL1ENSG00000171097.9144.74380431.33400-1.5753017.5775015.12270HepG2RBM27
CCBL1ENSG00000171097.9303.552001040.81190-1.7777054.0900052.41480HepG2NELFE
CCBL1ENSG00000171097.9355.17950969.41090-1.4486038.2723036.49330HepG2RECQL
CCBL1ENSG00000171097.989.30310309.14670-1.7915019.8586018.44270HepG2RPS19
CCBL1ENSG00000171097.9203.12100397.82330-0.969807.447606.17500HepG2RPS2
CCBL1ENSG00000171097.9193.17910406.07080-1.071809.322507.36720HepG2RPS5
CCBL1ENSG00000171097.974.96660188.21100-1.328007.036305.84880HepG2RRP9
CCBL1ENSG00000171097.9551.23670279.589700.9793014.9183013.60340HepG2SAFB2
CCBL1ENSG00000171097.9170.91880310.23290-0.860005.754004.41140HepG2SERBP1
CCBL1ENSG00000171097.995.65190478.50560-2.3227025.9065023.78770HepG2SF3A3
CCBL1ENSG00000171097.977.31150123.12260-0.671301.907001.31400HepG2SF3B1
CCBL1ENSG00000171097.9287.40740973.66210-1.7603051.5128049.59000HepG2SF3B4
CCBL1ENSG00000171097.9678.37020509.726700.412204.403603.54860HepG2SLBP
CCBL1ENSG00000171097.9150.37320326.04640-1.1165012.3395011.13300HepG2SMN1
CCBL1ENSG00000171097.9256.18030542.10210-1.0814016.0935015.14750HepG2SRFBP1
CCBL1ENSG00000171097.9203.292401016.31000-2.3217082.0375080.27730HepG2SRSF1
CCBL1ENSG00000171097.9244.86090132.503100.885804.060602.82420HepG2SRSF3
CCBL1ENSG00000171097.9375.13190524.86390-0.484503.803203.09090HepG2SRSF5
CCBL1ENSG00000171097.9353.73630173.684101.0261010.256509.06320HepG2SRSF7
CCBL1ENSG00000171097.9262.73910826.83740-1.6540046.4655044.75760HepG2SRSF9
CCBL1ENSG00000171097.9629.36020932.84490-0.567804.376602.79440HepG2SSRP1
CCBL1ENSG00000171097.9266.07660596.89350-1.1656020.2623018.82750HepG2SUCLG1
CCBL1ENSG00000171097.9762.52080913.54760-0.260701.857701.38140HepG2TAF15
CCBL1ENSG00000171097.9499.91790916.25520-0.874104.551403.20620HepG2TBRG4
CCBL1ENSG00000171097.9231.71940305.05700-0.396701.925001.49140HepG2TIAL1
CCBL1ENSG00000171097.9181.40930349.91200-0.947705.428403.41370HepG2TRA2A
CCBL1ENSG00000171097.9431.70520307.794000.488004.030603.37520HepG2TRIM56
CCBL1ENSG00000171097.9151.15210252.41830-0.739803.699901.90270HepG2TROVE2
CCBL1ENSG00000171097.9337.14700519.34640-0.623304.834103.64660HepG2TUFM
CCBL1ENSG00000171097.982.54420424.26200-2.3617011.025609.75020HepG2U2AF1
CCBL1ENSG00000171097.9216.33850145.062200.576502.337601.63900HepG2UCHL5
CCBL1ENSG00000171097.9246.39960424.36380-0.784304.520203.66340HepG2UPF1
CCBL1ENSG00000171097.9144.77660409.70280-1.5007014.9998013.77200HepG2UTP3
CCBL1ENSG00000171097.9179.65260342.69340-0.931704.964403.25510HepG2XRCC5
CCBL1ENSG00000171097.9166.05220383.17520-1.206409.138307.33540HepG2XRCC6
CCBL1ENSG00000171097.9335.92130466.71540-0.474402.775702.22820HepG2ZNF622
CCBL1ENSG00000171097.9232.11050348.17780-0.585002.808101.50300HepG2ZRANB2
CCBL1ENSG00000171097.9789.08130538.642300.550707.076606.23030K562AGGF1
CCBL1ENSG00000171097.9726.31600560.496100.373802.766102.11280K562AKAP8L
CCBL1ENSG00000171097.9656.39780515.783500.347702.073201.55060K562AQR
CCBL1ENSG00000171097.9215.18010143.210900.587302.294801.50760K562BOP1
CCBL1ENSG00000171097.9443.98360285.217500.638304.648902.98780K562CIRBP
CCBL1ENSG00000171097.9627.78480387.855900.694603.572802.33780K562CNOT7
CCBL1ENSG00000171097.9266.16590152.265300.805604.867303.83160K562CPSF6
CCBL1ENSG00000171097.9493.71340329.050900.585304.971903.32190K562DDX21
CCBL1ENSG00000171097.9210.29360333.47810-0.665205.072204.22710K562DDX47
CCBL1ENSG00000171097.9219.53930296.33340-0.432702.315101.64840K562EIF2S2
CCBL1ENSG00000171097.9129.94770226.41570-0.801002.886301.85620K562EIF3A
CCBL1ENSG00000171097.9446.39330574.66380-0.364402.823001.87580K562EIF4G2
CCBL1ENSG00000171097.9262.43510190.194700.464402.103501.36060K562FIP1L1
CCBL1ENSG00000171097.9204.42040379.82200-0.893807.851306.89930K562FXR1
CCBL1ENSG00000171097.978.47910190.78090-1.281506.954705.72060K562G3BP2
CCBL1ENSG00000171097.9687.04250419.932700.710102.936101.67270K562HNRNPA2B1
CCBL1ENSG00000171097.9178.75660265.74840-0.572102.518601.34530K562HNRNPK
CCBL1ENSG00000171097.9442.91800266.282400.734004.691903.21020K562IGF2BP2
CCBL1ENSG00000171097.9772.80410569.387900.440603.584002.30900K562MAK16
CCBL1ENSG00000171097.9428.73890304.307900.494503.601002.68670K562MTPAP
CCBL1ENSG00000171097.9494.69120338.142700.548805.184204.20790K562NSUN2
CCBL1ENSG00000171097.9642.26090367.317000.806003.517102.36240K562PABPN1
CCBL1ENSG00000171097.9328.69180215.937700.606003.620202.66300K562PPIG
CCBL1ENSG00000171097.9802.62890436.693900.878003.917702.07240K562PPP1R8
CCBL1ENSG00000171097.9110.05340256.71200-1.221904.574803.61050K562PRPF8
CCBL1ENSG00000171097.9381.60730626.97180-0.716306.662105.39320K562PUF60
CCBL1ENSG00000171097.9810.97510555.755600.545104.798004.10810K562PUS1
CCBL1ENSG00000171097.9799.82890541.585200.562406.631705.73900K562RBM15
CCBL1ENSG00000171097.9321.01430226.534000.502802.708401.72710K562RCC2
CCBL1ENSG00000171097.9141.80770261.39130-0.882303.254002.36680K562RPS19
CCBL1ENSG00000171097.9182.37940278.91200-0.612903.173302.01440K562SAFB
CCBL1ENSG00000171097.9131.39440198.26740-0.593502.867701.99650K562SF3B4
CCBL1ENSG00000171097.9361.24710266.419800.439202.302601.65020K562SRSF1
CCBL1ENSG00000171097.9438.33300251.659500.800506.843905.08150K562SRSF5
CCBL1ENSG00000171097.9482.37510293.642200.716007.390705.46480K562SRSF7
CCBL1ENSG00000171097.9154.31730313.93690-1.024608.723107.26600K562SYNCRIP
CCBL1ENSG00000171097.9350.68020260.064500.431202.285401.54840K562TIA1
CCBL1ENSG00000171097.9339.95500238.733400.509802.416701.54510K562TIAL1
CCBL1ENSG00000171097.9370.17400255.295500.535903.081301.91740K562TRA2A
CCBL1ENSG00000171097.9361.76820253.700900.511802.750001.80880K562TRIM56
CCBL1ENSG00000171097.988.71610184.80360-1.058705.321703.70350K562U2AF1
CCBL1ENSG00000171097.970.95650190.90280-1.4278010.283508.73440K562U2AF2
CCBL1ENSG00000171097.9425.18690306.793100.470702.603901.75230K562WDR3
CCBL1ENSG00000171097.9768.34010580.976200.403203.046102.13630K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCBL1 is not available on ENCORE database.





8 RBPs can affect the splicing of CCBL1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCBL1ENSG00000171097.9chr9-131600496131600646131600329131600416131604932131605080-0.189000.002130.03834excludedK562SRSF1
SECCBL1ENSG00000171097.9chr9-131600496131600646131600329131600416131604932131605080-0.066000.003290.06419excludedHepG2SRSF1
A3SSCCBL1ENSG00000171097.9chr9-1315982751315983841315982751315983521315990801315992010.304000.000020.00414longerHepG2HNRNPK
A3SSCCBL1ENSG00000171097.9chr9-1315982751315983841315982751315983521315990801315992010.282000.000040.01550longerHepG2NCBP2
A3SSCCBL1ENSG00000171097.9chr9-1315980571315981921315980571315981471315982751315983520.188000.000010.00008longerK562AQR
A3SSCCBL1ENSG00000171097.9chr9-1316004961316007421316004961316006461316049321316050800.126000.000000.00001longerK562AQR
A3SSCCBL1ENSG00000171097.9chr9-1315960181315962311315960181315961051315976011315976810.162000.000010.00007longerK562AQR
A3SSCCBL1ENSG00000171097.9chr9-1315990801315992861315990801315992011315999631316000920.089000.001920.01239longerK562AQR
A3SSCCBL1ENSG00000171097.9chr9-1315982751315983841315982751315983521315990801315992010.346000.001050.07043longerHepG2SF3B4
MXECCBL1ENSG00000171097.9chr9-131604932131605080131607631131607690131600496131600646131644175131644315-0.122000.000590.024562includedHepG2TAF15
MXECCBL1ENSG00000171097.9chr9-1316004961316006461316049321316050801316003291316004161316076311316076900.210000.001290.042731includedHepG2RBFOX2
MXECCBL1ENSG00000171097.9chr9-131600496131600646131604932131605080131600329131600416131607631131607690-0.209000.000000.000382includedHepG2DROSHA

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCBL1 is not avaliable on ENCORE database.