ARID5B

General Information

Gene Name       : ARID5B
Gene ID             : ENSG00000150347.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ARID5B)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ARID5BENSG00000150347.152.332.782.55ENCSR000AEF
HepG2ARID5BENSG00000150347.156.629.227.92ENCSR985KAT
K562ARID5BENSG00000150347.150.460.490.47ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ARID5B is not avaliable on ENCORE database.



Proteins bound to RNA
  • ARID5B RNA is bound by 12 proteins.  







eCLIP assay for ARID5B is not avaliable on ENCORE database.





12 proteins are bound to ARID5B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr106385491363854978+3'-UTR3.290303.12167HepG2FUBP3
chr106385635863856480+3'-UTR3.360585.53289HepG2DDX55
chr106385656263856655+3'-UTR5.059826.51775HepG2FUBP3
chr106385635863856450+3'-UTR3.313065.34980HepG2FUBP3
chr106385352463853583+3'-UTR3.669803.23424HepG2FUBP3
chr106366145563661493+5'-UTR,CDS,intron-Proximal3.951943.45994HepG2NCBP2
chr106369995163700010+CDS3.037597.20615HepG2BCLAF1
chr106381693263817028+CDS3.6334411.34372HepG2BCLAF1
chr106369993963700007+CDS,intron-Proximal3.248684.55250HepG2GRWD1
chr106385172063851788+CDS3.248477.61186HepG2IGF2BP1
chr106385071763850793+CDS4.2635012.50436HepG2BCLAF1
chr106384558963845661+CDS,intron-Proximal4.805949.74753HepG2BCLAF1
chr106381687563816932+CDS,intron-Proximal3.471548.99805HepG2BCLAF1
chr106370000763700117+CDS3.076826.97922HepG2GRWD1
chr106382950063829552+CDS3.479405.79905HepG2BCLAF1
chr106381900863819053+CDS3.105633.63043HepG2GRWD1
chr106384547163845588+CDS4.038068.66838HepG2BCLAF1
chr106370012763700167+CDS5.054107.39496HepG2BCLAF1
chr106381071163810761+CDS,intron-Proximal3.760378.25092HepG2BCLAF1
chr106381071263810760+CDS,intron-Proximal4.482155.42152HepG2GRWD1
chr106385062063850652+CDS,intron-Proximal4.810054.34038HepG2BCLAF1
chr106385152663851617+CDS4.565266.33775HepG2GRWD1
chr106381702863817086+CDS,intron-Proximal4.8421211.09109HepG2BCLAF1
chr106385096563851066+CDS3.216887.47194HepG2GRWD1
chr106385260363852654+CDS4.352534.71804HepG2HLTF
chr106370001063700115+CDS4.2250910.24470HepG2BCLAF1
chr106366191763661949+CDS,intron-Proximal3.096493.03570HepG2NCBP2
chr106385079363850853+CDS3.649874.74886HepG2BCLAF1
chr106385097663851084+CDS3.1720710.96545HepG2BCLAF1
chr106381900063819055+CDS,intron-Proximal4.067345.97823HepG2BCLAF1
chr106384558963845648+CDS3.842093.34184HepG2GRWD1
chr106372793663727958+intron-Distal4.476438.18013HepG2HNRNPL
chr106372795863727976+intron-Distal4.054195.63547HepG2HNRNPL
chr106366324063663312+intron-Distal3.916209.82247HepG2CSTF2T
chr106366294063663009+intron-Distal3.371196.05986HepG2CSTF2T
chr106370180563701872+intron-Distal3.302773.35377HepG2QKI
chr106372790163727936+intron-Distal3.487513.41538HepG2HNRNPL
chr106372797663728034+intron-Distal4.400499.98238HepG2HNRNPL
chr106370082663700891+intron-Distal4.626285.89032HepG2QKI
chr106366293663663023+intron-Distal3.329963.57490HepG2NKRF
chr106381681663816873+intron-Proximal4.629775.31973HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ARID5B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ARID5B is not available on ENCORE database.

  • 131 RBPs can affect the levels of ARID5B.  








The Knockdown/knockout RNA-Seq assay for ARID5B is not available on ENCORE database.





131 RBPs can affect the gene expression of ARID5B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ARID5BENSG00000150347.10709.621501647.19790-1.2149018.8705016.80720HepG2ABCF1
ARID5BENSG00000150347.10828.12650987.54310-0.254002.373401.80330HepG2ACO1
ARID5BENSG00000150347.10898.636501684.26030-0.9063010.624309.64940HepG2AKAP1
ARID5BENSG00000150347.10916.762701487.05190-0.697808.802406.48120HepG2ATP5C1
ARID5BENSG00000150347.101170.123701953.76870-0.7396019.1281017.62580HepG2AUH
ARID5BENSG00000150347.10493.48840795.53060-0.688905.326704.01470HepG2BCCIP
ARID5BENSG00000150347.10472.821801211.76790-1.3577027.1448025.59340HepG2BOP1
ARID5BENSG00000150347.101306.442501914.33900-0.551208.260507.02960HepG2CALR
ARID5BENSG00000150347.101394.793802837.80630-1.0247013.2519011.21430HepG2CCAR1
ARID5BENSG00000150347.10675.73500987.24310-0.546909.017107.94810HepG2CKAP4
ARID5BENSG00000150347.10581.252501751.50520-1.5914020.4175018.39990HepG2CNOT7
ARID5BENSG00000150347.101675.175501356.934000.303902.793601.68400HepG2CPSF7
ARID5BENSG00000150347.10994.564901343.75770-0.434105.540404.10110HepG2YBX3
ARID5BENSG00000150347.10865.714701696.37880-0.9705035.3240033.26900HepG2DAZAP1
ARID5BENSG00000150347.10859.913101345.59730-0.6460010.907008.85260HepG2DDX1
ARID5BENSG00000150347.10798.703001161.95840-0.540805.072704.18270HepG2DDX21
ARID5BENSG00000150347.10501.52200731.83660-0.545203.349301.94320HepG2DDX27
ARID5BENSG00000150347.10964.990101613.36910-0.741508.494307.44830HepG2DDX3X
ARID5BENSG00000150347.10427.31770782.18190-0.872207.982506.74730HepG2DDX55
ARID5BENSG00000150347.10868.347701483.38860-0.7726010.320108.51450HepG2DDX5
ARID5BENSG00000150347.10765.024701272.59600-0.734209.984008.25340HepG2DHX30
ARID5BENSG00000150347.10689.63690944.78910-0.454205.297404.41490HepG2DKC1
ARID5BENSG00000150347.10912.825601319.41940-0.531507.930606.78880HepG2DNAJC21
ARID5BENSG00000150347.10933.934001307.84110-0.485809.085907.98510HepG2DNAJC2
ARID5BENSG00000150347.10836.734001603.39040-0.9383013.8254012.01100HepG2EEF2
ARID5BENSG00000150347.10923.736401336.72400-0.533104.994203.50540HepG2EFTUD2
ARID5BENSG00000150347.10986.158701332.31430-0.434003.305702.66150HepG2EIF2S1
ARID5BENSG00000150347.10986.977601301.63090-0.399202.817101.90730HepG2EIF3D
ARID5BENSG00000150347.10831.634301096.92270-0.399403.813102.56990HepG2EIF3G
ARID5BENSG00000150347.102515.398801433.579100.811107.842606.71420HepG2EIF4B
ARID5BENSG00000150347.101036.591901673.52980-0.6910015.6571013.99860HepG2EIF4G1
ARID5BENSG00000150347.101013.009001603.14380-0.662308.312706.93550HepG2EIF4G2
ARID5BENSG00000150347.101093.866801427.16450-0.383702.805201.70340HepG2ESF1
ARID5BENSG00000150347.101407.749602243.21700-0.6722017.8023016.49570HepG2ETF1
ARID5BENSG00000150347.101391.446001039.268000.420903.255601.36230HepG2EXOSC9
ARID5BENSG00000150347.101041.454401587.01540-0.607705.636603.29930HepG2FMR1
ARID5BENSG00000150347.101091.634901625.83570-0.574703.959802.63020HepG2FUS
ARID5BENSG00000150347.10727.034901158.94470-0.672707.307805.87270HepG2GEMIN5
ARID5BENSG00000150347.10814.090601235.28010-0.601605.828504.33460HepG2GNB2L1
ARID5BENSG00000150347.101896.837101260.999900.588905.615004.72430HepG2GPKOW
ARID5BENSG00000150347.10817.556401332.06060-0.704309.592408.49670HepG2HNRNPA1
ARID5BENSG00000150347.101309.874901558.99160-0.251202.648701.73310HepG2HNRNPA2B1
ARID5BENSG00000150347.10893.254501481.69520-0.730109.986408.73850HepG2HNRNPC
ARID5BENSG00000150347.101360.077701017.564800.418505.277704.32710HepG2HNRNPF
ARID5BENSG00000150347.10877.663601203.39990-0.455403.653202.93940HepG2HNRNPLL
ARID5BENSG00000150347.10611.420501147.89350-0.9088014.2757012.39720HepG2HNRNPM
ARID5BENSG00000150347.10933.863401471.89740-0.6564014.4015013.10990HepG2HNRNPU
ARID5BENSG00000150347.101082.970201400.76870-0.371202.698702.03050HepG2IGF2BP2
ARID5BENSG00000150347.101210.030401503.49030-0.313304.894603.94130HepG2ILF2
ARID5BENSG00000150347.101123.837901707.38550-0.603404.228702.56370HepG2ILF3
ARID5BENSG00000150347.101300.240402996.16180-1.2043018.2500016.12160HepG2LARP4
ARID5BENSG00000150347.10814.655801210.21380-0.571006.212904.53520HepG2LARP7
ARID5BENSG00000150347.10829.827701270.70790-0.614706.863405.01180HepG2LIN28B
ARID5BENSG00000150347.10930.448601486.12900-0.675607.013105.98400HepG2MAGOH
ARID5BENSG00000150347.101148.789601494.43290-0.379502.427401.83370HepG2MATR3
ARID5BENSG00000150347.10692.218401346.60560-0.9600016.1768014.40690HepG2MSI2
ARID5BENSG00000150347.101528.958501130.656900.435304.811603.21470HepG2NAA15
ARID5BENSG00000150347.101122.964501374.08360-0.291203.085102.45010HepG2PCBP1
ARID5BENSG00000150347.101356.441301076.410000.333503.296501.94870HepG2PKM
ARID5BENSG00000150347.101640.002301312.810600.320903.661502.82560HepG2PPIL4
ARID5BENSG00000150347.101210.509601938.20720-0.6791016.7074015.06990HepG2PRPF4
ARID5BENSG00000150347.10391.44230603.33740-0.624204.476603.47540HepG2PRPF8
ARID5BENSG00000150347.101643.387601398.262300.232902.389701.87500HepG2PTBP1
ARID5BENSG00000150347.10533.201001605.71640-1.5905043.8683041.86710HepG2PUF60
ARID5BENSG00000150347.10912.113401704.51910-0.9021032.0554030.48700HepG2PUM1
ARID5BENSG00000150347.101024.976201703.28630-0.7327013.4563012.04650HepG2PUM2
ARID5BENSG00000150347.101780.763701514.180400.233902.145101.58350HepG2QKI
ARID5BENSG00000150347.102403.877201691.268900.507207.791806.45700HepG2RBM15
ARID5BENSG00000150347.10856.657101874.90830-1.1300034.5579033.12210HepG2RBM22
ARID5BENSG00000150347.102194.697501374.281100.6752011.5554010.23930HepG2RBM25
ARID5BENSG00000150347.10899.291301185.03400-0.398103.168902.03260HepG2RCC2
ARID5BENSG00000150347.102120.979501449.384400.5492012.1137010.96150HepG2RECQL
ARID5BENSG00000150347.10997.598401458.89200-0.548303.315602.28050HepG2RPS10
ARID5BENSG00000150347.10592.127601266.51480-1.0969021.6794020.21560HepG2RPS19
ARID5BENSG00000150347.10832.026101345.88070-0.693808.157806.82850HepG2RPS2
ARID5BENSG00000150347.101152.888401758.02850-0.608704.691103.65010HepG2RPS3A
ARID5BENSG00000150347.10919.491301310.77550-0.511509.144208.08020HepG2SAFB2
ARID5BENSG00000150347.10983.515601271.19140-0.370202.528901.62780HepG2SERBP1
ARID5BENSG00000150347.101760.856301455.626600.274503.380502.73530HepG2SF3B4
ARID5BENSG00000150347.101302.522401539.59120-0.241202.916202.19680HepG2SLBP
ARID5BENSG00000150347.10823.563501528.56170-0.8922029.8859028.13710HepG2SMN1
ARID5BENSG00000150347.102573.104802117.629200.281004.409903.82020HepG2SRFBP1
ARID5BENSG00000150347.101234.626101519.41820-0.299403.337302.83020HepG2SRSF1
ARID5BENSG00000150347.101967.045801281.708900.617905.374503.94120HepG2SRSF3
ARID5BENSG00000150347.10922.132001585.38740-0.7818019.1546017.71430HepG2SRSF5
ARID5BENSG00000150347.101447.345401236.178600.227402.520601.98800HepG2SRSF9
ARID5BENSG00000150347.10662.227001838.58480-1.4732065.4128063.75360HepG2SSB
ARID5BENSG00000150347.101993.232001388.167100.521803.121001.83710HepG2SUB1
ARID5BENSG00000150347.10881.541101803.04240-1.0323038.5288036.67630HepG2SUCLG1
ARID5BENSG00000150347.103158.100501365.876401.2091049.0393047.06090HepG2TAF15
ARID5BENSG00000150347.10836.065502105.08280-1.332206.016604.50520HepG2TBRG4
ARID5BENSG00000150347.101790.494801254.880200.512707.082205.75460HepG2TIA1
ARID5BENSG00000150347.10369.386501430.13280-1.9529067.9132066.05000HepG2TIAL1
ARID5BENSG00000150347.101078.460401568.68470-0.540606.947205.46420HepG2TUFM
ARID5BENSG00000150347.10907.130001423.12000-0.649706.776805.80500HepG2U2AF1
ARID5BENSG00000150347.10592.778501051.02870-0.8262017.5319016.06970HepG2UPF1
ARID5BENSG00000150347.10403.63990712.95070-0.820705.607604.13940HepG2UPF2
ARID5BENSG00000150347.10743.125501080.32140-0.539807.794706.14260HepG2UTP18
ARID5BENSG00000150347.10517.378501014.72910-0.9718020.7987019.38820HepG2UTP3
ARID5BENSG00000150347.10801.635901574.62880-0.9740010.108108.06090HepG2XPO5
ARID5BENSG00000150347.102058.750301460.461000.495202.994901.67950HepG2XRCC5
ARID5BENSG00000150347.10393.69620766.48090-0.9612010.434409.04430HepG2XRN2
ARID5BENSG00000150347.10709.807801912.79440-1.4302071.5066069.06050HepG2ZC3H8
ARID5BENSG00000150347.10749.888601155.93240-0.6243013.0835012.11680HepG2ZNF622
ARID5BENSG00000150347.1052.1922021.049901.309902.645401.49450K562AARS
ARID5BENSG00000150347.10233.6571078.257101.5780011.567409.18550K562ABCF1
ARID5BENSG00000150347.10115.0205058.088300.985503.207302.58420K562AQR
ARID5BENSG00000150347.1049.9090018.769901.410802.958001.59670K562BCCIP
ARID5BENSG00000150347.1046.9136018.137301.370902.708301.75750K562BCLAF1
ARID5BENSG00000150347.10151.0781046.834401.689603.775102.75500K562BOP1
ARID5BENSG00000150347.10125.0320054.511501.197604.750402.81970K562BUD13
ARID5BENSG00000150347.1087.0781036.463501.255804.166902.58050K562CIRBP
ARID5BENSG00000150347.10169.6649059.015601.523406.621504.93130K562CNOT7
ARID5BENSG00000150347.10128.5530046.395401.470207.518505.66890K562CPEB4
ARID5BENSG00000150347.10195.6555049.805501.9738010.147008.63450K562CPSF6
ARID5BENSG00000150347.1088.0580032.873901.421404.058801.74640K562DAZAP1
ARID5BENSG00000150347.1067.6208027.924101.275903.650102.43120K562DDX3X
ARID5BENSG00000150347.1089.2615047.999400.894902.669902.02770K562DDX47
ARID5BENSG00000150347.1082.4178020.399102.014407.039105.52940K562EFTUD2
ARID5BENSG00000150347.10125.1542038.389601.704803.345202.56630K562EIF2S2
ARID5BENSG00000150347.10226.8124050.662102.1624014.0786012.08670K562FMR1
ARID5BENSG00000150347.10121.6282042.934701.502204.164503.02290K562FTO
ARID5BENSG00000150347.1096.8695020.450702.243805.034903.09270K562GEMIN5
ARID5BENSG00000150347.10132.9635047.557701.483206.933905.67550K562GPKOW
ARID5BENSG00000150347.1095.1650034.025401.483705.113903.54130K562IGF2BP2
ARID5BENSG00000150347.1071.2991034.607001.042702.998901.74470K562IGF2BP3
ARID5BENSG00000150347.10163.9401040.593402.0138010.848208.87810K562KRR1
ARID5BENSG00000150347.10157.4745046.419201.7622010.309908.54770K562METAP2
ARID5BENSG00000150347.1062.4661031.216201.000702.243501.51150K562MTPAP
ARID5BENSG00000150347.1094.4984029.132201.697606.675104.79940K562NCBP2
ARID5BENSG00000150347.1062.2753019.918301.644504.754102.61340K562PKM
ARID5BENSG00000150347.10112.2425062.121900.853303.021202.18330K562POLR2G
ARID5BENSG00000150347.10202.1027019.850503.3477022.4365020.29460K562PRPF8
ARID5BENSG00000150347.1068.4901034.739300.979202.632401.98220K562PTBP1
ARID5BENSG00000150347.10122.3864063.302000.951003.392902.32840K562PUM2
ARID5BENSG00000150347.10150.0462082.397500.864602.930502.37440K562PUS1
ARID5BENSG00000150347.1057.4016020.967301.452803.024201.53330K562RAVER1
ARID5BENSG00000150347.10150.6052033.308902.1767015.3292013.16290K562RBM22
ARID5BENSG00000150347.1071.3370020.853001.774305.982203.94500K562RBM25
ARID5BENSG00000150347.10124.2763047.017701.402203.812601.93230K562RBM39
ARID5BENSG00000150347.1048.8734020.224801.272801.998501.31000K562RPS19
ARID5BENSG00000150347.1064.7838016.990601.930805.621003.43770K562SERBP1
ARID5BENSG00000150347.10145.6234034.947202.058906.787804.62620K562SF1
ARID5BENSG00000150347.10222.6025034.223102.7013020.9650018.90240K562SF3A3
ARID5BENSG00000150347.10556.6144045.208303.6219022.4102019.64280K562SF3B1
ARID5BENSG00000150347.1086.5558022.858901.920802.688101.84660K562SF3B4
ARID5BENSG00000150347.1068.6758023.744301.532104.132001.94960K562SLTM
ARID5BENSG00000150347.1090.5858040.141201.174102.625701.44120K562SNRNP200
ARID5BENSG00000150347.1045.7359017.859701.356502.517901.55120K562SRFBP1
ARID5BENSG00000150347.1073.9287019.228301.942805.999704.46020K562SUPV3L1
ARID5BENSG00000150347.10190.6470021.311203.1611027.0441023.53700K562U2AF1
ARID5BENSG00000150347.10189.0383022.005903.1026030.1936027.61830K562U2AF2
ARID5BENSG00000150347.1062.4060020.346401.616803.937002.69930K562UCHL5
ARID5BENSG00000150347.10139.9256036.778401.9276011.7384010.38610K562UPF1
ARID5BENSG00000150347.10220.0119088.878201.307608.309406.32600K562UTP3
ARID5BENSG00000150347.10164.3486040.846802.008408.790905.76900K562XPO5
ARID5BENSG00000150347.1055.6147020.711401.424903.324701.96010K562XRN2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ARID5B is not available on ENCORE database.





1 RBPs can affect the splicing of ARID5B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEARID5BENSG00000150347.10chr10+637598496376008063699941637001676381064663810759-0.263000.007660.07399excludedHepG2U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ARID5B is not avaliable on ENCORE database.