ZSCAN12

General Information

Gene Name       : ZSCAN12
Gene ID             : ENSG00000158691.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZSCAN12)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZSCAN12ENSG00000158691.146.916.866.88ENCSR000AEF
HepG2ZSCAN12ENSG00000158691.142.945.464.20ENCSR985KAT
K562ZSCAN12ENSG00000158691.148.879.789.32ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZSCAN12 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZSCAN12 RNA is bound by 9 proteins.  







eCLIP assay for ZSCAN12 is not avaliable on ENCORE database.





9 proteins are bound to ZSCAN12 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr62835004528350140-3'-UTR,intron-Distal4.651975.65349K562RBM15
chr62836741428367495-5'-UTR,intron-Distal3.621875.29681HepG2NCBP2
chr62836593528365990-CDS,intron-Distal4.086343.48187K562RBM15
chr62835928628359434-CDS,intron-Distal4.7023217.00912K562UCHL5
chr62835911828359196-CDS,intron-Distal4.247365.08313K562GRWD1
chr62836577828365822-CDS,intron-Distal,intron-Proximal3.531833.36945K562ZNF622
chr62835909928359215-CDS,intron-Distal4.7381711.98007K562ZNF622
chr62835864928358769-CDS,intron-Distal3.070145.89932K562ZNF622
chr62836603428366146-CDS,intron-Distal3.214796.95218K562UCHL5
chr62835927928359336-CDS,intron-Distal3.086453.13705K562BUD13
chr62835842728358470-CDS,intron-Distal3.824315.80935K562ZNF622
chr62835868728358743-CDS,intron-Distal4.409847.87612K562UCHL5
chr62835931328359420-CDS,intron-Distal3.692305.76525K562PUM1
chr62836597528366050-CDS,intron-Distal3.768426.55026K562ZNF622
chr62835924528359422-CDS,intron-Distal3.538555.80673K562GRWD1
chr62835903528359264-CDS,intron-Distal4.7912124.34528K562UCHL5
chr62835847828358548-CDS,intron-Distal3.344557.50303K562UCHL5
chr62835921528359423-CDS,intron-Distal4.0594017.63240K562ZNF622
chr62836572428365786-CDS,intron-Distal,intron-Proximal3.942344.15711K562AQR
chr62835058628350655-intron-Distal3.307644.56724K562KHSRP
chr62835242128352482-intron-Distal3.233064.35650K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZSCAN12 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZSCAN12 is not available on ENCORE database.

  • 38 RBPs can affect the levels of ZSCAN12.  








The Knockdown/knockout RNA-Seq assay for ZSCAN12 is not available on ENCORE database.





38 RBPs can affect the gene expression of ZSCAN12 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZSCAN12ENSG00000158691.10338.21020223.261000.599103.446202.34380HepG2ADAR
ZSCAN12ENSG00000158691.10178.13900290.05430-0.703303.658602.75760HepG2ASCC1
ZSCAN12ENSG00000158691.10223.38740346.14210-0.631805.319304.33680HepG2DAZAP1
ZSCAN12ENSG00000158691.10172.25900288.40290-0.743503.653002.95110HepG2DDX6
ZSCAN12ENSG00000158691.10174.98780277.32040-0.664303.155402.52380HepG2EIF2S1
ZSCAN12ENSG00000158691.10247.79870337.35180-0.445101.935801.40070HepG2HNRNPLL
ZSCAN12ENSG00000158691.10206.71820291.58060-0.496202.124901.52380HepG2IGF2BP2
ZSCAN12ENSG00000158691.10444.34270309.254600.522802.904302.23310HepG2MAGOH
ZSCAN12ENSG00000158691.10192.43310283.56830-0.559302.539301.84490HepG2PABPC4
ZSCAN12ENSG00000158691.10624.48850333.150000.9064011.8193010.90280HepG2RBM22
ZSCAN12ENSG00000158691.10556.01540354.290900.650103.618002.84320HepG2SF3A3
ZSCAN12ENSG00000158691.10407.12560326.695400.317401.837301.39800HepG2SSB
ZSCAN12ENSG00000158691.10145.74410205.20000-0.493602.170501.33280HepG2SUPT6H
ZSCAN12ENSG00000158691.10357.99630257.349000.476102.906102.33280HepG2TAF15
ZSCAN12ENSG00000158691.10314.19350236.457700.410002.077901.35060HepG2TIA1
ZSCAN12ENSG00000158691.10177.45820245.86640-0.470402.370301.83990HepG2TRIM56
ZSCAN12ENSG00000158691.10526.88530259.979601.019009.138407.98900HepG2U2AF1
ZSCAN12ENSG00000158691.1079.92290127.20160-0.670402.183701.50840HepG2UCHL5
ZSCAN12ENSG00000158691.10229.62530314.20230-0.452402.674001.98490HepG2UPF1
ZSCAN12ENSG00000158691.10385.53800303.349300.345801.830201.32100HepG2UTP3
ZSCAN12ENSG00000158691.10231.27320345.56180-0.579304.560403.90300HepG2ZNF622
ZSCAN12ENSG00000158691.10540.54270769.74090-0.510005.668304.90180K562AGGF1
ZSCAN12ENSG00000158691.10645.52560845.79140-0.389802.912201.89670K562AKAP8
ZSCAN12ENSG00000158691.101612.157201015.472800.666707.787406.88580K562AQR
ZSCAN12ENSG00000158691.10686.62520837.23700-0.286102.247301.58890K562EIF2S2
ZSCAN12ENSG00000158691.101102.73740522.413301.0777018.3155016.04070K562EIF4A3
ZSCAN12ENSG00000158691.10643.62620852.75330-0.405902.969202.08890K562FIP1L1
ZSCAN12ENSG00000158691.10830.40990606.488100.453202.544601.87160K562G3BP2
ZSCAN12ENSG00000158691.10603.02510756.02460-0.326202.020601.33890K562GPKOW
ZSCAN12ENSG00000158691.10878.916201095.72950-0.318102.436001.45240K562HNRNPL
ZSCAN12ENSG00000158691.10826.638201156.11090-0.484004.223003.24650K562HSPD1
ZSCAN12ENSG00000158691.10635.68420850.03100-0.419203.309002.39850K562KIF1C
ZSCAN12ENSG00000158691.10800.20640627.498400.350702.278001.39520K562PCBP2
ZSCAN12ENSG00000158691.10762.66760968.08650-0.344102.317101.56740K562PPIG
ZSCAN12ENSG00000158691.10528.85250794.37980-0.587005.037904.33300K562PUS1
ZSCAN12ENSG00000158691.10583.52080773.94870-0.407503.552102.89390K562RBM15
ZSCAN12ENSG00000158691.10872.41640630.896700.467504.752903.62110K562SF3B4
ZSCAN12ENSG00000158691.10392.75570560.85620-0.514003.621102.51220K562TRIM56
ZSCAN12ENSG00000158691.10951.80990588.171600.694306.318804.52170K562U2AF1
ZSCAN12ENSG00000158691.10925.22780607.359200.607207.520506.19450K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZSCAN12 is not available on ENCORE database.





4 RBPs can affect the splicing of ZSCAN12 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZSCAN12ENSG00000158691.10chr6-283657802836625028360678283608232836743328367511-0.182000.002070.03747excludedK562SRSF1
SEZSCAN12ENSG00000158691.10chr6-2836067828360823283467312835038628367433283675080.510000.005360.07780includedK562SF3B4
SEZSCAN12ENSG00000158691.10chr6-283657802836625028360678283608232836743328367511-0.127000.003490.05621excludedK562SF3B4
A3SSZSCAN12ENSG00000158691.10chr6-2836067828360905283606782836082328365780283662500.260000.000000.00003longerK562AQR
MXEZSCAN12ENSG00000158691.10chr6-28360678283608572836578028366250283583722835951928367433283675110.233000.002500.041331includedK562PUS1
MXEZSCAN12ENSG00000158691.10chr6-28360678283608232836578028366250283583722835951928367433283675080.228000.003840.056731includedK562PUS1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZSCAN12 is not avaliable on ENCORE database.