ZNF394

General Information

Gene Name       : ZNF394
Gene ID             : ENSG00000160908.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF394)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF394ENSG00000160908.1413.5115.0014.25ENCSR000AEF
HepG2ZNF394ENSG00000160908.147.008.247.62ENCSR985KAT
K562ZNF394ENSG00000160908.1417.1217.1417.13ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF394 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF394 RNA is bound by 11 proteins.  







eCLIP assay for ZNF394 is not avaliable on ENCORE database.





11 proteins are bound to ZNF394 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr79909129399091343-3'-UTR,CDS,intron-Distal4.1995011.72141K562LIN28B
chr79909176199091808-3'-UTR,CDS,intron-Distal3.273455.95627K562RBM15
chr79909182999091879-3'-UTR,CDS,intron-Distal3.848125.71420K562RBM15
chr79909155799091630-3'-UTR,CDS,intron-Distal3.566134.20387K562ZNF622
chr79909204299092081-3'-UTR,CDS,intron-Distal4.404145.16052K562RBM15
chr79909199099092081-3'-UTR,CDS,intron-Distal3.635626.43326K562UCHL5
chr79909208199092140-3'-UTR,CDS,intron-Distal,intron-Proximal3.302404.68262K562RBM15
chr79909134399091381-3'-UTR,CDS,intron-Distal5.2788610.31179K562LIN28B
chr79909777199097820-5'-UTR,intron-Distal3.764314.74268K562UCHL5
chr79909772699097820-5'-UTR,intron-Distal5.9354116.40428K562RBM15
chr79909763499097694-CDS,intron-Distal3.603134.24220K562ZNF622
chr79909754799097608-CDS,intron-Distal,intron-Proximal4.282508.03807K562RBM15
chr79909746799097516-CDS,intron-Distal,intron-Proximal4.260508.37444K562RBM15
chr79909631499096373-CDS,intron-Distal,intron-Proximal3.877006.06579K562SRSF1
chr79909764099097684-CDS,intron-Distal4.603324.82934K562RBM15
chr79909637399096431-CDS,intron-Distal,intron-Proximal3.071094.74580K562SRSF1
chr79909078299090852-intron-Distal,intron-Proximal4.497704.65731HepG2CSTF2
chr79909447199094508-intron-Distal4.300793.16986HepG2QKI
chr79909365099093754-intron-Distal7.6161731.98927HepG2QKI
chr79909460799094689-intron-Distal3.9005414.01675K562HNRNPL
chr79909621799096333-intron-Distal,intron-Proximal4.895794.86944K562AQR
chr79909367899093747-intron-Distal3.904263.60701K562KHDRBS1
chr79909459499094706-intron-Distal5.087958.51782HepG2HNRNPL
chr79909366499093773-intron-Distal8.40926117.85066K562QKI
chr79909447599094538-intron-Distal4.236415.51743K562QKI
chr79909379099093848-intron-Distal4.5600610.58655HepG2QKI
chr79909078299090853-intron-Distal,intron-Proximal4.7634512.30805K562CSTF2T
chr79909377399093850-intron-Distal5.9280835.06511K562QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF394 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF394 is not available on ENCORE database.

  • 24 RBPs can affect the levels of ZNF394.  








The Knockdown/knockout RNA-Seq assay for ZNF394 is not available on ENCORE database.





24 RBPs can affect the gene expression of ZNF394 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF394ENSG00000160908.14446.15190264.193800.755804.512303.85490HepG2AKAP1
ZNF394ENSG00000160908.14321.15770217.694800.560903.974703.20460HepG2CKAP4
ZNF394ENSG00000160908.14344.09620253.066100.443201.876101.35040HepG2DDX3X
ZNF394ENSG00000160908.14357.95300233.124800.618603.373902.64890HepG2MAGOH
ZNF394ENSG00000160908.14340.38990234.423100.538002.395101.80600HepG2MATR3
ZNF394ENSG00000160908.14338.73080239.939900.497402.217601.64850HepG2NCBP2
ZNF394ENSG00000160908.14475.61540293.909400.694302.799902.27940HepG2RBM22
ZNF394ENSG00000160908.14379.00260232.674600.703804.928004.05050HepG2RPLP0
ZNF394ENSG00000160908.14399.17180248.653500.682804.066303.24180HepG2SF3A3
ZNF394ENSG00000160908.14366.78520195.865900.905004.652503.62880HepG2SNRNP70
ZNF394ENSG00000160908.14413.91940331.960700.318201.816801.38500HepG2SRFBP1
ZNF394ENSG00000160908.14294.59640211.687700.476702.813702.25870HepG2SRSF9
ZNF394ENSG00000160908.14415.90000187.573501.148709.517708.33810HepG2U2AF1
ZNF394ENSG00000160908.14669.32430482.641200.471703.489302.75200K562AKAP8L
ZNF394ENSG00000160908.142433.89490709.571001.7781054.3192052.03290K562AQR
ZNF394ENSG00000160908.14554.53960363.760600.608205.079103.96470K562EIF4A3
ZNF394ENSG00000160908.14516.40650378.296800.448903.471502.80510K562FXR1
ZNF394ENSG00000160908.14255.72670384.55260-0.588603.641602.96860K562HNRNPC
ZNF394ENSG00000160908.14567.93330402.198900.497702.476001.65290K562NAA15
ZNF394ENSG00000160908.14482.77040343.837700.489503.136002.09420K562PCBP2
ZNF394ENSG00000160908.14558.45100379.699000.556503.606902.74980K562PRPF8
ZNF394ENSG00000160908.141190.61350903.944900.397303.336902.44170K562PUF60
ZNF394ENSG00000160908.14693.86390478.678300.535504.008503.37270K562PUS1
ZNF394ENSG00000160908.14610.95340466.374400.389502.819402.22120K562RBM15
ZNF394ENSG00000160908.14490.32590359.974000.445702.820201.97180K562RBM22
ZNF394ENSG00000160908.14719.99010509.794400.498005.005303.93520K562SF3A3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF394 is not available on ENCORE database.





4 RBPs can affect the splicing of ZNF394 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEZNF394ENSG00000160908.14chr7-990963389909646599090862990922549909726099097920-0.456000.000250.00631excludedHepG2U2AF1
SEZNF394ENSG00000160908.14chr7-990963389909646599090862990922549909726099097920-0.230000.000460.00627excludedK562AQR
SEZNF394ENSG00000160908.14chr7-990963389909646599090862990922549909726099097920-0.306000.000040.01472excludedK562APOBEC3C
SEZNF394ENSG00000160908.14chr7-9909633899096465990908629909225499097260990979200.304000.000380.04441includedK562CPSF6
A3SSZNF394ENSG00000160908.14chr7-9909220199092344990922019909225499096338990964650.157000.001870.01214longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for ZNF394 is not avaliable on ENCORE database.