TRAPPC2

General Information

Gene Name       : TRAPPC2
Gene ID             : ENSG00000196459.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TRAPPC2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TRAPPC2ENSG00000196459.1314.559.9312.24ENCSR000AEF
HepG2TRAPPC2ENSG00000196459.134.465.184.82ENCSR985KAT
K562TRAPPC2ENSG00000196459.139.469.209.33ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TRAPPC2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TRAPPC2 RNA is bound by 6 proteins.  







eCLIP assay for TRAPPC2 is not avaliable on ENCORE database.





6 proteins are bound to TRAPPC2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX1373106413731108-3'-UTR,intron-Distal3.671143.42164K562UPF1
chrX1373041913730570-3'-UTR,intron-Distal3.460827.18440K562ZC3H11A
chrX1373049013730591-3'-UTR,intron-Distal3.964348.11238K562PUM2
chrX1373115513731213-3'-UTR,intron-Distal5.152257.71000K562FAM120A
chrX1373095813731009-3'-UTR,intron-Distal3.197216.65594K562UPF1
chrX1373048813730611-3'-UTR,intron-Distal4.431834.79379K562KHSRP
chrX1373094413730995-3'-UTR,intron-Distal4.580054.36811K562FAM120A
chrX1373068413730724-3'-UTR,intron-Distal3.328894.75109K562UPF1
chrX1373187913731934-3'-UTR,intron-Distal3.4173512.21438K562UPF1
chrX1373039313730486-3'-UTR,intron-Distal3.082745.62342K562KHSRP
chrX1373188913731940-3'-UTR,intron-Distal,intron-Proximal4.479747.07901K562FAM120A
chrX1374225813742378-intron-Distal4.189233.72005K562MATR3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TRAPPC2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TRAPPC2 is not available on ENCORE database.

  • 22 RBPs can affect the levels of TRAPPC2.  








The Knockdown/knockout RNA-Seq assay for TRAPPC2 is not available on ENCORE database.





22 RBPs can affect the gene expression of TRAPPC2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TRAPPC2ENSG00000196459.9234.43250133.473600.812503.026102.21890HepG2CIRBP
TRAPPC2ENSG00000196459.9120.55050181.30110-0.588802.332801.77890HepG2PUF60
TRAPPC2ENSG00000196459.9191.92640118.394100.696902.071301.45340HepG2RAVER1
TRAPPC2ENSG00000196459.9275.98960169.213100.705704.251603.64490HepG2RBM22
TRAPPC2ENSG00000196459.9159.84550101.531600.654602.519101.76520HepG2RRP9
TRAPPC2ENSG00000196459.960.33370100.96700-0.742802.333301.73380HepG2SAFB2
TRAPPC2ENSG00000196459.9107.59320173.82850-0.692103.269502.51770HepG2SLBP
TRAPPC2ENSG00000196459.9122.81380179.00200-0.543502.252901.68110HepG2SRSF5
TRAPPC2ENSG00000196459.9667.49860485.295000.459804.344903.66210K562AGGF1
TRAPPC2ENSG00000196459.9188.57500280.48740-0.572802.977501.87940K562CSTF2
TRAPPC2ENSG00000196459.9354.18660582.05830-0.716705.893104.78580K562GRSF1
TRAPPC2ENSG00000196459.9276.39380428.52720-0.632705.026203.59520K562HNRNPA1
TRAPPC2ENSG00000196459.9799.99320600.345700.414103.216802.22320K562MBNL1
TRAPPC2ENSG00000196459.9645.17200420.798700.616503.725702.66400K562NAA15
TRAPPC2ENSG00000196459.9383.22250522.30770-0.446703.248102.53470K562PTBP1
TRAPPC2ENSG00000196459.9691.19780500.796900.464803.220102.64190K562PUS1
TRAPPC2ENSG00000196459.9400.82610527.12290-0.395202.301401.32560K562NELFE
TRAPPC2ENSG00000196459.9279.27350423.54480-0.600803.774102.77030K562SF3B4
TRAPPC2ENSG00000196459.9291.60030512.01590-0.812207.891606.70590K562SRSF1
TRAPPC2ENSG00000196459.9378.58860518.23610-0.453002.783302.07460K562TARDBP
TRAPPC2ENSG00000196459.9353.29800499.88600-0.500703.614202.65950K562TIA1
TRAPPC2ENSG00000196459.9350.30450447.38250-0.352902.320601.65890K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TRAPPC2 is not available on ENCORE database.





9 RBPs can affect the splicing of TRAPPC2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETRAPPC2ENSG00000196459.9chrX-1375216213752304137379891373810113752643137527540.323000.000210.09671includedK562TAF15
SETRAPPC2ENSG00000196459.9chrX-1375216213752304137379891373810113752643137527540.435000.000000.00000includedK562SRSF1
SETRAPPC2ENSG00000196459.9chrX-1373854613738616137379891373810113752162137523040.235000.000610.02545includedK562PRPF8
SETRAPPC2ENSG00000196459.9chrX-137521621375230413737989137381011375264313752754-0.272000.000180.00827excludedK562AKAP8L
SETRAPPC2ENSG00000196459.9chrX-1375216813752304137379891373810113752643137526940.257000.000550.07190includedK562DROSHA
SETRAPPC2ENSG00000196459.9chrX-1375216213752304137379891373810113752643137527540.263000.000020.00073includedK562U2AF1
SETRAPPC2ENSG00000196459.9chrX-137385461373861613737989137381011375216213752304-0.111000.006110.09417excludedK562U2AF1
SETRAPPC2ENSG00000196459.9chrX-1375216213752304137379891373810113752643137527540.214000.000120.08224includedK562TBRG4
SETRAPPC2ENSG00000196459.9chrX-1375216213752304137379891373810113752643137527540.273000.000130.00349includedK562U2AF2
SETRAPPC2ENSG00000196459.9chrX-137521621375230413737989137381011375264313752754-0.292000.000180.00696excludedK562RBM15

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TRAPPC2 is not avaliable on ENCORE database.