TBC1D25

General Information

Gene Name       : TBC1D25
Gene ID             : ENSG00000068354.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TBC1D25)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TBC1D25ENSG00000068354.154.397.095.74ENCSR000AEF
HepG2TBC1D25ENSG00000068354.155.552.794.17ENCSR985KAT
K562TBC1D25ENSG00000068354.155.424.124.77ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TBC1D25 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TBC1D25 RNA is bound by 2 proteins.  







eCLIP assay for TBC1D25 is not avaliable on ENCORE database.





2 proteins are bound to TBC1D25 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX4841936048419455+3'-UTR3.719593.19539K562YBX3
chrX4841864248418785+CDS4.775936.83406K562RBM15
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TBC1D25 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TBC1D25 is not available on ENCORE database.

  • 51 RBPs can affect the levels of TBC1D25.  








The Knockdown/knockout RNA-Seq assay for TBC1D25 is not available on ENCORE database.





51 RBPs can affect the gene expression of TBC1D25 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TBC1D25ENSG00000068354.11397.35860231.897200.776907.519306.32700HepG2AKAP8L
TBC1D25ENSG00000068354.11415.10440287.686500.528902.835102.14170HepG2AUH
TBC1D25ENSG00000068354.11334.60190230.749900.536003.832403.07390HepG2CKAP4
TBC1D25ENSG00000068354.11303.84220221.967700.452902.870502.21800HepG2CELF1
TBC1D25ENSG00000068354.11438.60390290.971500.591903.375202.69330HepG2DDX3X
TBC1D25ENSG00000068354.11418.91250250.049900.744304.583203.80530HepG2DDX6
TBC1D25ENSG00000068354.11139.81890220.86470-0.659602.799702.11890HepG2DKC1
TBC1D25ENSG00000068354.11229.20820149.006000.621203.338902.57140HepG2DNAJC21
TBC1D25ENSG00000068354.11240.64850147.706600.704104.740403.92420HepG2DNAJC2
TBC1D25ENSG00000068354.11343.35910240.280400.514902.362101.81190HepG2EIF2S1
TBC1D25ENSG00000068354.11231.22480134.933300.776903.523302.51090HepG2EIF3D
TBC1D25ENSG00000068354.11379.90070265.490400.516902.428901.82830HepG2EIF4A3
TBC1D25ENSG00000068354.11291.86610219.297800.412302.256001.40310HepG2HNRNPA2B1
TBC1D25ENSG00000068354.11249.30380167.335100.575102.492101.83100HepG2HNRNPC
TBC1D25ENSG00000068354.11367.21010266.461000.462603.167102.40340HepG2HNRNPF
TBC1D25ENSG00000068354.11351.70250217.280300.694706.767105.75740HepG2HNRNPL
TBC1D25ENSG00000068354.11275.86700169.795800.700105.457204.45600HepG2ILF2
TBC1D25ENSG00000068354.11499.09410297.858400.744604.804903.69900HepG2LARP4
TBC1D25ENSG00000068354.11429.84190275.915500.639503.757903.02420HepG2NCBP2
TBC1D25ENSG00000068354.11410.49580245.633000.740804.947503.99210HepG2PABPC4
TBC1D25ENSG00000068354.11319.56120235.063000.442902.422801.84590HepG2PCBP1
TBC1D25ENSG00000068354.11294.57030225.851000.383101.987401.47080HepG2PUF60
TBC1D25ENSG00000068354.11340.15240239.588800.505501.863001.30720HepG2PUM2
TBC1D25ENSG00000068354.11441.15550306.061900.527403.706402.73050HepG2RBM15
TBC1D25ENSG00000068354.11474.03760276.098400.779707.450106.69680HepG2RBM22
TBC1D25ENSG00000068354.11209.15050131.772900.666402.752701.81660HepG2SERBP1
TBC1D25ENSG00000068354.11653.72130276.870101.2394012.3199010.83790HepG2SF3A3
TBC1D25ENSG00000068354.11337.09750249.037900.436702.256101.71530HepG2SF3B4
TBC1D25ENSG00000068354.11330.00140164.216201.006806.834405.27460HepG2SMNDC1
TBC1D25ENSG00000068354.11111.98250251.24660-1.165805.751704.61600HepG2SNRNP70
TBC1D25ENSG00000068354.11491.12050311.827400.655203.304202.77210HepG2SRFBP1
TBC1D25ENSG00000068354.11333.93210261.785100.351101.904101.31550HepG2SRSF7
TBC1D25ENSG00000068354.11279.99300211.451900.405002.030901.54350HepG2SRSF9
TBC1D25ENSG00000068354.11269.65610381.75850-0.501502.535701.30580HepG2SSRP1
TBC1D25ENSG00000068354.11235.32310161.501500.543002.644402.15360HepG2TIAL1
TBC1D25ENSG00000068354.11456.72790260.215200.811505.736304.84870HepG2U2AF1
TBC1D25ENSG00000068354.11410.18600160.459501.354003.873002.69480HepG2U2AF2
TBC1D25ENSG00000068354.11168.4961099.671000.757402.282901.59260HepG2UCHL5
TBC1D25ENSG00000068354.11333.21980237.061200.491103.107602.47920HepG2UTP3
TBC1D25ENSG00000068354.11271.33880208.656300.378901.872401.30500HepG2ZC3H8
TBC1D25ENSG00000068354.11476.13280270.048900.8180010.375609.48620HepG2ZNF622
TBC1D25ENSG00000068354.11483.93940366.216800.402002.040701.53910K562AGGF1
TBC1D25ENSG00000068354.11555.85510331.331300.746303.892402.59040K562CNOT7
TBC1D25ENSG00000068354.11361.62460186.319600.956607.062905.55130K562EFTUD2
TBC1D25ENSG00000068354.11292.00220199.453400.549802.358901.41210K562EIF3D
TBC1D25ENSG00000068354.11256.18850186.502600.457902.352301.31020K562EIF4B
TBC1D25ENSG00000068354.1150.5020091.90750-0.863802.238701.61230K562G3BP2
TBC1D25ENSG00000068354.11224.26140398.12560-0.828005.823604.61300K562PCBP3
TBC1D25ENSG00000068354.11173.91060305.37150-0.812205.844704.68400K562POLR2G
TBC1D25ENSG00000068354.11318.82960223.568500.512002.532701.67310K562PSIP1
TBC1D25ENSG00000068354.11627.48010386.270100.699908.011306.68430K562SF3A3
TBC1D25ENSG00000068354.11193.3310095.609101.015806.393605.05570K562SF3B4
TBC1D25ENSG00000068354.11291.03890193.410300.589402.949501.88010K562SRFBP1
TBC1D25ENSG00000068354.11342.18320173.310600.981308.171006.96570K562SRSF1
TBC1D25ENSG00000068354.11277.98300175.498800.663403.117802.03900K562SUPV3L1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TBC1D25 is not available on ENCORE database.





5 RBPs can affect the splicing of TBC1D25 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETBC1D25ENSG00000068354.11chrX+484032564840341148399720483998304841728448417414-0.305000.004050.03919excludedK562AQR
A5SSTBC1D25ENSG00000068354.11chrX+483997204839990148399720483998304840325648403411-0.275000.001090.07321shorterK562HNRNPC
RITBC1D25ENSG00000068354.11chrX+4841728448417734484172844841741248417545484177340.150000.000540.00388includedK562AQR
MXETBC1D25ENSG00000068354.11chrX+4840325648403411484172844841741248399720483998304841754548417734-0.265000.001110.025812includedHepG2SRSF1
MXETBC1D25ENSG00000068354.11chrX+4840325648403411484172844841741248399720483998304841754548417734-0.197000.006500.083712includedK562PUS1
MXETBC1D25ENSG00000068354.11chrX+4840325648403411484172844841741248399720483998304841754548417734-0.277000.000510.024972includedK562AKAP8L

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TBC1D25 is not avaliable on ENCORE database.