SSX1

General Information

Gene Name       : SSX1
Gene ID             : ENSG00000126752.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: SSX1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878SSX1ENSG00000126752.70.000.000.00ENCSR000AEF
HepG2SSX1ENSG00000126752.70.000.000.00ENCSR985KAT
K562SSX1ENSG00000126752.7129.56148.53139.05ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for SSX1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • SSX1 RNA is bound by 12 proteins.  







eCLIP assay for SSX1 is not avaliable on ENCORE database.





12 proteins are bound to SSX1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX4812647948126507+3'-UTR3.569213.57974K562IGF2BP1
chrX4812680448126851+3'-UTR3.980213.36226K562PCBP1
chrX4812674648126804+3'-UTR3.620274.68791K562PCBP1
chrX4812632448126360+3'-UTR3.906454.00952K562ZNF800
chrX4812680848126856+3'-UTR3.734266.48340K562HNRNPL
chrX4812582548125844+3'-UTR,intron-Proximal3.582404.98672K562AQR
chrX4812643048126531+3'-UTR4.182846.91637K562NOLC1
chrX4812633648126382+3'-UTR3.432489.63625K562YBX3
chrX4812654048126596+3'-UTR5.444227.84269K562IGF2BP1
chrX4812643448126529+3'-UTR4.6392220.30609HepG2SUB1
chrX4812650748126540+3'-UTR4.511208.21596K562IGF2BP1
chrX4812679548126857+3'-UTR5.552609.44079K562IGF2BP2
chrX4811797348117999+CDS4.434834.72838K562UCHL5
chrX4811800248118024+CDS3.357585.51805K562YBX3
chrX4812120448121244+CDS3.308206.88121K562YBX3
chrX4812120048121246+CDS,intron-Proximal3.299773.41653K562SND1
chrX4812120048121204+CDS,intron-Proximal3.474816.97264K562YBX3
chrX4811797048118002+CDS,intron-Proximal4.3078114.16446K562YBX3
chrX4811725448117295+CDS4.231357.49879K562PUM2
chrX4811728448117295+CDS4.4300810.01513K562YBX3
chrX4812324848123282+CDS3.434833.95937K562UCHL5
chrX4812584448125867+intron-Proximal4.035845.26367K562AQR
chrX4811674548116767+intron-Proximal4.743364.65563K562AQR
chrX4811676748116784+intron-Proximal4.860594.65563K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for SSX1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for SSX1 is not available on ENCORE database.

  • 21 RBPs can affect the levels of SSX1.  








The Knockdown/knockout RNA-Seq assay for SSX1 is not available on ENCORE database.





21 RBPs can affect the gene expression of SSX1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
SSX1ENSG00000126752.74236.546405017.58990-0.244101.891501.34740K562AKAP8L
SSX1ENSG00000126752.72874.582703826.43450-0.412604.333303.63070K562AQR
SSX1ENSG00000126752.71845.053302579.55900-0.483508.972506.51100K562BCCIP
SSX1ENSG00000126752.72152.628102492.65680-0.211602.401301.50930K562BCLAF1
SSX1ENSG00000126752.77272.463906039.229500.268003.161402.12130K562CELF1
SSX1ENSG00000126752.71561.123202107.87260-0.433205.195303.70550K562DDX3X
SSX1ENSG00000126752.73758.421704613.97220-0.295905.006804.16610K562DDX47
SSX1ENSG00000126752.71481.158202182.11470-0.559004.385102.73660K562EEF2
SSX1ENSG00000126752.71628.715002108.33800-0.372403.089102.12190K562EFTUD2
SSX1ENSG00000126752.71386.285902257.36900-0.703407.357005.53740K562EIF3D
SSX1ENSG00000126752.74173.615904911.41630-0.234803.109002.11630K562EIF4G2
SSX1ENSG00000126752.73508.564202956.202400.247002.784301.88720K562HNRNPU
SSX1ENSG00000126752.73315.077203921.74790-0.242502.070301.31190K562METAP2
SSX1ENSG00000126752.73893.070403463.239400.168702.025001.32830K562MTPAP
SSX1ENSG00000126752.73198.868902528.302500.339303.906402.28980K562PCBP1
SSX1ENSG00000126752.71906.977402535.59440-0.411003.763102.46770K562NELFE
SSX1ENSG00000126752.71527.387002089.82650-0.452303.445602.53130K562RPS19
SSX1ENSG00000126752.72465.498503301.14490-0.421103.987002.75770K562RPS3
SSX1ENSG00000126752.73425.253302463.484000.475406.999105.88380K562SRSF1
SSX1ENSG00000126752.72571.910402137.574000.266803.081701.71720K562SSB
SSX1ENSG00000126752.72713.411202268.628000.258202.518601.75230K562U2AF2
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for SSX1 is not available on ENCORE database.





6 RBPs can affect the splicing of SSX1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SESSX1ENSG00000126752.7chrX+481179454811806648117180481172954812120048121250-0.058000.000000.00000excludedK562SF3B4
SESSX1ENSG00000126752.7chrX+4811642248116528481147514811486748116656481167450.066000.000000.00000includedK562AQR
MXESSX1ENSG00000126752.7chrX+4811549448115571481163674811652848114751481148674811665648116745-0.348000.001030.035212includedK562PTBP1
MXESSX1ENSG00000126752.7chrX+4811548548115571481163674811652848114751481148674811665648116745-0.205000.004040.093032includedK562PTBP1
MXESSX1ENSG00000126752.7chrX+4811548848115571481163674811652848114751481148674811665648116745-0.415000.001580.058732includedK562FXR1
MXESSX1ENSG00000126752.7chrX+4811548548115571481163674811652848114751481148674811665648116745-0.436000.000000.000132includedK562FXR1
MXESSX1ENSG00000126752.7chrX+4811546148115571481164224811652848114751481148674811665648116745-0.301000.003610.027372includedK562AQR
MXESSX1ENSG00000126752.7chrX+4811546148115571481162974811652848114751481148674811665648116745-0.274000.012220.074392includedK562AQR
MXESSX1ENSG00000126752.7chrX+4811546148115571481163674811652848114751481148674811665648116745-0.247000.016190.093102includedK562AQR
MXESSX1ENSG00000126752.7chrX+4811548548115571481164224811652848114751481148674811665648116745-0.298000.000850.007952includedK562AQR
MXESSX1ENSG00000126752.7chrX+4811548548115571481162974811652848114751481148674811665648116745-0.271000.003880.029062includedK562AQR
MXESSX1ENSG00000126752.7chrX+4811548548115571481163674811652848114751481148674811665648116745-0.249000.005390.038342includedK562AQR
MXESSX1ENSG00000126752.7chrX+4811665648116745481180114811806648114751481148674812120048121250-0.119000.000020.066332includedK562WRN
MXESSX1ENSG00000126752.7chrX+4811548548115706481163674811652848114751481148674811665648116745-0.294000.001910.032092includedK562SF3B4
MXESSX1ENSG00000126752.7chrX+4811548548115591481163674811652848114751481148674811665648116745-0.278000.003850.052992includedK562SF3B4
MXESSX1ENSG00000126752.7chrX+4811549448115571481163674811652848114751481148674811665648116745-0.394000.000150.015832includedK562HNRNPK
MXESSX1ENSG00000126752.7chrX+4811549448115571481164224811652848114751481148674811665648116745-0.386000.000460.032222includedK562HNRNPK
MXESSX1ENSG00000126752.7chrX+4811548548115571481163674811652848114751481148674811665648116745-0.225000.001170.061052includedK562HNRNPK
MXESSX1ENSG00000126752.7chrX+4811548548115571481164224811652848114751481148674811665648116745-0.221000.002250.096382includedK562HNRNPK

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for SSX1 is not avaliable on ENCORE database.