RP13-279N23.2

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP13-279N23.2 is not avaliable on ENCORE database.

Proteins bound to RNA

RP13-279N23.2 RNA is bound by 28 proteins.

eCLIP assay for RP13-279N23.2 is not avaliable on ENCORE database.

28 proteins are bound to RP13-279N23.2 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	19201914	19201993	-	3'-UTR,CDS,intron-Distal	4.24860	7.49320	HepG2	G3BP1
chr1	19208211	19208277	-	3'-UTR,CDS,intron-Distal	4.54414	10.36166	HepG2	RPS3
chr1	19208354	19208439	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.46963	8.54455	HepG2	CSTF2T
chr1	19208378	19208427	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.01703	6.97285	HepG2	BUD13
chr1	19203894	19203911	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.10794	16.58422	HepG2	PRPF8
chr1	19201016	19201111	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.29606	12.10533	HepG2	AQR
chr1	19201864	19201881	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.80470	11.04988	HepG2	AQR
chr1	19200961	19200979	-	3'-UTR,CDS,intron-Distal	3.97681	4.96634	HepG2	PPIG
chr1	19202813	19202825	-	3'-UTR,CDS,intron-Distal	3.69065	4.77136	HepG2	PPIG
chr1	19201801	19201880	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.74759	4.13847	K562	AQR
chr1	19209878	19209923	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.36982	4.00698	HepG2	GRSF1
chr1	19201047	19201124	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.62533	9.95156	HepG2	SF3A3
chr1	19205792	19205816	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.46974	5.75388	HepG2	G3BP1
chr1	19202759	19202819	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.06355	7.74688	HepG2	PRPF8
chr1	19201928	19201976	-	3'-UTR,CDS,intron-Distal	4.43934	5.79466	HepG2	RPS3
chr1	19205750	19205808	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.14851	9.59394	HepG2	PRPF8
chr1	19208346	19208434	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.52619	11.86251	HepG2	PRPF4
chr1	19208328	19208382	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.54539	6.12687	HepG2	RPS3
chr1	19201985	19202047	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.93807	5.03032	HepG2	SF3B4
chr1	19203730	19203793	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.92521	4.28193	HepG2	AQR
chr1	19200958	19201077	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.09620	5.31130	HepG2	G3BP1
chr1	19202944	19202989	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.65995	4.28193	HepG2	AQR
chr1	19209737	19209787	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.78003	7.56654	HepG2	PRPF8
chr1	19205832	19205902	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.18157	6.03362	HepG2	AQR
chr1	19203651	19203705	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.61517	9.60578	HepG2	AQR
chr1	19209563	19209621	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.68249	6.92290	HepG2	AQR
chr1	19200953	19201023	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.32722	3.72123	HepG2	AKAP1
chr1	19200919	19200987	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.05219	9.00124	HepG2	PRPF8
chr1	19216606	19216666	-	5'-UTR,intron-Distal,intron-Proximal	3.92444	16.59406	HepG2	SF3A3
chr1	19216505	19216564	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.15131	12.12223	HepG2	PPIG
chr1	19212957	19212996	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.08468	5.14343	HepG2	PPIG
chr1	19212935	19213032	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.30470	7.09786	HepG2	AQR
chr1	19211982	19212053	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.89907	7.61854	HepG2	RPS3
chr1	19216569	19216661	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.83227	5.00154	HepG2	AQR
chr1	19212120	19212169	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.74915	4.90235	K562	SF3B4
chr1	19212994	19213051	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.89784	9.92460	HepG2	SF3B4
chr1	19212113	19212166	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.53754	14.04488	HepG2	SF3A3
chr1	19215835	19215946	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.27515	15.60869	HepG2	PPIG
chr1	19211968	19212026	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.15306	9.58474	HepG2	PPIG
chr1	19211966	19212033	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.12276	4.65014	HepG2	G3BP1
chr1	19212115	19212172	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.11538	16.02729	HepG2	SF3B4
chr1	19215808	19215861	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.76773	27.24055	HepG2	PRPF8
chr1	19212049	19212116	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.79167	7.01771	HepG2	G3BP1
chr1	19216600	19216675	-	5'-UTR,intron-Distal,intron-Proximal	3.45890	4.13911	HepG2	SF3B4
chr1	19212063	19212129	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.18684	13.73242	HepG2	PPIG
chr1	19244818	19244877	-	CDS,intron-Distal,intron-Proximal	5.91467	8.04585	HepG2	PRPF8
chr1	19212640	19212695	-	intron-Distal	3.18996	5.59141	HepG2	PRPF4
chr1	19206917	19206973	-	intron-Distal	3.53925	4.72468	HepG2	FAM120A
chr1	19203867	19203910	-	intron-Distal,intron-Proximal	5.11872	6.74224	HepG2	AQR
chr1	19203392	19203436	-	intron-Distal	3.84275	4.64467	HepG2	HNRNPL
chr1	19203777	19203830	-	intron-Distal,intron-Proximal	3.02064	6.92749	HepG2	PRPF8
chr1	19199030	19199133	-	3'-UTR,intron-Distal	5.80388	45.32074	HepG2	UPF1
chr1	19213079	19213155	-	intron-Distal,intron-Proximal	3.39991	6.34084	HepG2	PRPF4
chr1	19209406	19209536	-	intron-Distal,intron-Proximal	3.94498	7.53498	HepG2	PRPF4
chr1	19213084	19213145	-	intron-Distal,intron-Proximal	4.71629	5.54349	HepG2	GTF2F1
chr1	19198348	19198378	-	3'-UTR,intron-Distal	4.87685	6.64872	K562	UPF1
chr1	19206803	19206897	-	intron-Distal	6.27828	23.48608	HepG2	PRPF4
chr1	19197947	19197995	-	3'-UTR,intron-Distal	5.62459	9.20661	K562	UPF1
chr1	19199267	19199309	-	3'-UTR,intron-Distal,intron-Proximal	6.00013	14.45776	HepG2	AKAP1
chr1	19207737	19207786	-	intron-Distal	3.83282	3.01020	HepG2	RBM5
chr1	19212891	19212954	-	intron-Distal,intron-Proximal	3.92537	16.36500	HepG2	EFTUD2
chr1	19198679	19198762	-	3'-UTR,intron-Distal	5.86481	23.25085	HepG2	AKAP1
chr1	19228702	19228778	-	intron-Distal	3.17757	5.60104	HepG2	DDX59
chr1	19212746	19212858	-	intron-Distal	3.77187	11.13990	HepG2	PRPF4
chr1	19203794	19203839	-	intron-Distal,intron-Proximal	3.25443	3.46130	HepG2	PRPF4
chr1	19198135	19198202	-	3'-UTR,intron-Distal	4.78234	10.58184	K562	UPF1
chr1	19203590	19203638	-	intron-Distal,intron-Proximal	3.42071	7.15565	HepG2	BUD13
chr1	19198135	19198212	-	3'-UTR,intron-Distal	7.24609	36.45496	HepG2	AKAP1
chr1	19206897	19207007	-	intron-Distal	4.61981	12.57889	HepG2	PRPF4
chr1	19205757	19205793	-	intron-Distal,intron-Proximal	4.25376	5.90528	HepG2	AQR
chr1	19201718	19201791	-	intron-Distal,intron-Proximal	3.94629	6.82867	HepG2	HNRNPK
chr1	19234735	19234802	-	3'-UTR,intron-Distal,intron-Proximal	4.27649	4.49605	HepG2	UPF1
chr1	19222229	19222293	-	intron-Distal	3.66270	6.01218	HepG2	HNRNPM
chr1	19198943	19198991	-	3'-UTR,intron-Distal	5.14327	15.50467	HepG2	AKAP1
chr1	19205868	19205931	-	intron-Distal,intron-Proximal	3.71323	5.22697	HepG2	SF3B4
chr1	19203588	19203678	-	intron-Distal,intron-Proximal	3.84865	6.03140	HepG2	PRPF4
chr1	19215816	19215856	-	intron-Distal,intron-Proximal	4.21504	3.59236	HepG2	AQR
chr1	19206804	19206849	-	intron-Distal	3.91316	6.37789	HepG2	GTF2F1
chr1	19206384	19206441	-	intron-Distal	3.08072	7.73582	HepG2	NKRF
chr1	19197956	19198005	-	3'-UTR,intron-Distal	5.08198	7.28964	HepG2	LARP4
chr1	19203600	19203659	-	intron-Distal,intron-Proximal	4.97250	19.33005	HepG2	EFTUD2
chr1	19212772	19212844	-	intron-Distal	4.19264	7.76457	HepG2	GTF2F1
chr1	19206800	19206886	-	intron-Distal	4.18832	4.17531	HepG2	RBFOX2
chr1	19203867	19203894	-	intron-Distal,intron-Proximal	4.63230	15.79030	HepG2	PRPF8
chr1	19201261	19201399	-	intron-Distal	3.49219	9.07363	HepG2	BUD13
chr1	19201831	19201861	-	intron-Distal,intron-Proximal	4.70403	20.46330	HepG2	PRPF8
chr1	19206802	19206868	-	intron-Distal	3.35533	7.93684	HepG2	CSTF2T
chr1	19198138	19198226	-	3'-UTR,intron-Distal	6.62825	37.58522	HepG2	UPF1
chr1	19234860	19234922	-	3'-UTR,intron-Distal	3.91392	3.35877	HepG2	UPF1
chr1	19198363	19198392	-	3'-UTR,intron-Distal	4.61569	11.77596	HepG2	UPF1
chr1	19207582	19207622	-	intron-Distal	3.66814	5.82826	HepG2	PRPF4
chr1	19198755	19198821	-	3'-UTR,intron-Distal	4.86730	12.17194	K562	UPF1
chr1	19206784	19206852	-	intron-Distal	3.59712	11.71128	HepG2	NKRF
chr1	19222659	19222729	-	intron-Distal	3.56416	7.99654	HepG2	HNRNPM
chr1	19208482	19208552	-	intron-Distal	3.66795	3.52528	HepG2	FAM120A
chr1	19209395	19209486	-	intron-Distal	4.64668	8.86977	HepG2	EFTUD2
chr1	19243882	19243963	-	intron-Distal	5.66196	13.05472	HepG2	RBFOX2
chr1	19212901	19212955	-	intron-Distal,intron-Proximal	4.25246	7.38067	HepG2	PRPF8
chr1	19198526	19198607	-	3'-UTR,intron-Distal	6.01116	29.40421	HepG2	AKAP1
chr1	19213079	19213135	-	intron-Distal,intron-Proximal	3.88258	3.27601	HepG2	RBM5
chr1	19234542	19234637	-	3'-UTR,intron-Distal	4.42124	4.19989	HepG2	UPF1
chr1	19243805	19243882	-	intron-Distal	5.08056	7.48549	HepG2	RBFOX2
chr1	19212502	19212530	-	intron-Distal	3.27167	4.08218	HepG2	EFTUD2
chr1	19201808	19201859	-	intron-Distal,intron-Proximal	4.40578	6.46571	HepG2	RBM22
chr1	19207622	19207668	-	intron-Distal	3.58810	7.70534	HepG2	PRPF4
chr1	19201831	19201864	-	intron-Distal,intron-Proximal	6.06526	13.22655	HepG2	AQR
chr1	19198775	19198835	-	3'-UTR,intron-Distal	6.79851	29.32232	HepG2	AKAP1
chr1	19206579	19206631	-	intron-Distal	3.04736	6.15331	HepG2	NKRF
chr1	19198358	19198417	-	3'-UTR,intron-Distal	4.07437	3.66655	K562	YBX3
chr1	19199264	19199317	-	3'-UTR,intron-Distal,intron-Proximal	4.58777	19.87627	HepG2	UPF1
chr1	19243687	19243805	-	intron-Distal	5.26051	7.76562	HepG2	RBFOX2
chr1	19204502	19204586	-	intron-Distal	3.55296	5.61462	HepG2	PRPF4
chr1	19199133	19199212	-	3'-UTR,intron-Distal,intron-Proximal	6.52887	39.66219	HepG2	UPF1
chr1	19244243	19244311	-	intron-Distal	4.43447	4.77477	HepG2	RBFOX2
chr1	19222309	19222335	-	intron-Distal	4.71334	5.37406	HepG2	HNRNPM
chr1	19199041	19199129	-	3'-UTR,intron-Distal	7.39689	39.54236	HepG2	AKAP1
chr1	19198510	19198598	-	3'-UTR,intron-Distal	6.11001	16.65207	K562	UPF1
chr1	19203344	19203392	-	intron-Distal	3.28395	8.77754	HepG2	HNRNPL
chr1	19198357	19198440	-	3'-UTR,intron-Distal	4.74781	19.98165	HepG2	AKAP1
chr1	19199129	19199233	-	3'-UTR,intron-Distal,intron-Proximal	5.93494	41.20689	HepG2	AKAP1
chr1	19206798	19206844	-	intron-Distal	3.49960	8.80665	HepG2	FAM120A
chr1	19203751	19203811	-	intron-Distal,intron-Proximal	5.03913	21.37935	HepG2	EFTUD2
chr1	19212750	19212845	-	intron-Distal	3.69396	6.62542	HepG2	EFTUD2
chr1	19203588	19203663	-	intron-Distal,intron-Proximal	3.26051	3.98726	HepG2	RBFOX2
chr1	19201078	19201141	-	intron-Distal,intron-Proximal	3.34177	3.02665	HepG2	SF3B4
chr1	19212506	19212640	-	intron-Distal	4.38478	16.10450	HepG2	PRPF4
chr1	19198006	19198138	-	3'-UTR,intron-Distal	6.62636	55.34573	HepG2	UPF1
chr1	19198440	19198519	-	3'-UTR,intron-Distal	5.84028	26.85477	HepG2	AKAP1
chr1	19198009	19198124	-	3'-UTR,intron-Distal	4.93391	27.83535	HepG2	AKAP1
chr1	19201861	19201876	-	intron-Distal,intron-Proximal	3.59398	14.63346	HepG2	PRPF8
chr1	19198855	19198902	-	3'-UTR,intron-Distal	5.35216	18.02948	HepG2	UPF1
chr1	19198510	19198616	-	3'-UTR,intron-Distal	5.95287	36.76948	HepG2	UPF1
chr1	19203159	19203220	-	intron-Distal	3.12803	6.97637	HepG2	HNRNPL
chr1	19198059	19198125	-	3'-UTR,intron-Distal	3.54253	8.84494	HepG2	GRSF1
chr1	19222729	19222767	-	intron-Distal	4.23523	8.65817	HepG2	HNRNPM
chr1	19207567	19207662	-	intron-Distal	3.08281	5.25603	HepG2	TAF15
chr1	19198664	19198759	-	3'-UTR,intron-Distal	5.46031	33.15622	HepG2	UPF1
chr1	19202054	19202094	-	intron-Distal,intron-Proximal	4.33777	8.11292	HepG2	EFTUD2
chr1	19228484	19228565	-	intron-Distal	3.08005	5.96304	HepG2	HNRNPK
chr1	19206849	19206893	-	intron-Distal	4.78869	6.68679	HepG2	GTF2F1
chr1	19198287	19198295	-	3'-UTR,intron-Distal	4.47632	10.28733	HepG2	AKAP1
chr1	19198769	19198826	-	3'-UTR,intron-Distal	5.17178	19.79568	HepG2	UPF1
chr1	19203304	19203344	-	intron-Distal	3.07445	8.25667	HepG2	HNRNPL
chr1	19197995	19198073	-	3'-UTR,intron-Distal	6.49134	16.48629	K562	UPF1
chr1	19198392	19198456	-	3'-UTR,intron-Distal	5.92887	23.04605	HepG2	UPF1
chr1	19228679	19228809	-	intron-Distal	3.51219	10.04564	HepG2	HNRNPK
chr1	19201635	19201694	-	intron-Distal	3.79518	14.33444	HepG2	XPO5
chr1	19206925	19206967	-	intron-Distal	4.29060	4.41148	HepG2	GTF2F1
chr1	19203811	19203859	-	intron-Distal,intron-Proximal	4.90440	11.64439	HepG2	EFTUD2
chr1	19198926	19199144	-	3'-UTR,intron-Distal	4.92662	24.73151	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP13-279N23.2 is not avaliable on ENCORE database.

Summary
AS Affected by

Diffrential Expression

The Knockdown/knockout assay for RP13-279N23.2 is not available on ENCORE database.
No RBPs affect the gene expression of RP13-279N23.2 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RP13-279N23.2 is not available on ENCORE database.

No RBPs affect the gene expression of RP13-279N23.2 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RP13-279N23.2 is not available on ENCORE database.

14 RBPs can affect the splicing of RP13-279N23.2 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP13-279N23.2	ENSG00000255275.3	chr1	-	19212957	19213005	19211966	19212122	19215855	19215948	0.05900	0.00052	0.04783	included	HepG2	G3BP1
SE	RP13-279N23.2	ENSG00000255275.3	chr1	-	19202808	19202961	19201875	19201997	19203701	19203749	-0.33500	0.00020	0.00557	excluded	K562	SRSF1
SE	RP13-279N23.2	ENSG00000255275.3	chr1	-	19212957	19213005	19211966	19212122	19215855	19215948	0.09900	0.00017	0.01925	included	HepG2	TBRG4
SE	RP13-279N23.2	ENSG00000255275.3	chr1	-	19202808	19202961	19201875	19201997	19203701	19203749	0.10900	0.00458	0.04950	included	HepG2	U2AF2
SE	RP13-279N23.2	ENSG00000255275.3	chr1	-	19212957	19213005	19211966	19212122	19215855	19215948	-0.22100	0.00587	0.05305	excluded	K562	AQR
SE	RP13-279N23.2	ENSG00000255275.3	chr1	-	19202808	19202961	19201875	19201997	19203701	19203749	-0.07300	0.00009	0.01243	excluded	HepG2	DDX3X
SE	RP13-279N23.2	ENSG00000255275.3	chr1	-	19212957	19213005	19211975	19212122	19215855	19215948	-0.12300	0.00008	0.02294	excluded	HepG2	UCHL5
SE	RP13-279N23.2	ENSG00000255275.3	chr1	-	19212957	19213005	19211966	19212122	19215855	19215948	-0.52400	0.00000	0.00001	excluded	K562	PUS1
SE	RP13-279N23.2	ENSG00000255275.3	chr1	-	19202808	19202961	19201875	19201997	19203701	19203749	-0.05500	0.00165	0.08105	excluded	HepG2	NCBP2
SE	RP13-279N23.2	ENSG00000255275.3	chr1	-	19202808	19202961	19201875	19201997	19203701	19203749	-0.07700	0.00314	0.09781	excluded	HepG2	MATR3
SE	RP13-279N23.2	ENSG00000255275.3	chr1	-	19202808	19202961	19201875	19201997	19203701	19203742	-0.28400	0.00000	0.00000	excluded	HepG2	SRSF1
SE	RP13-279N23.2	ENSG00000255275.3	chr1	-	19202808	19202961	19201875	19201997	19203701	19203749	-0.15400	0.00000	0.00010	excluded	HepG2	PCBP1
SE	RP13-279N23.2	ENSG00000255275.3	chr1	-	19208193	19208381	19203909	19204106	19209617	19209692	-0.07000	0.00245	0.09406	excluded	HepG2	PCBP1
SE	RP13-279N23.2	ENSG00000255275.3	chr1	-	19202808	19202961	19201875	19201997	19203701	19203749	-0.11600	0.00000	0.00004	excluded	HepG2	SF3B4
SE	RP13-279N23.2	ENSG00000255275.3	chr1	-	19212957	19213005	19211966	19212122	19215855	19215948	-0.13400	0.00000	0.00044	excluded	HepG2	SF3B4
SE	RP13-279N23.2	ENSG00000255275.3	chr1	-	19212957	19213005	19211966	19212122	19215855	19215948	-0.33800	0.00042	0.01401	excluded	K562	RBM15
SE	RP13-279N23.2	ENSG00000255275.3	chr1	-	19212957	19213005	19211966	19212122	19215855	19215948	-0.26900	0.00167	0.04117	excluded	K562	AGGF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP13-279N23.2

General Information

Functions

Localization

Domains (AlphaFold: RP13-279N23.2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP13-279N23.2 is not avaliable on ENCORE database.

28 proteins are bound to RP13-279N23.2 RNA:

eCLIP assay for RP13-279N23.2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP13-279N23.2 is not available on ENCORE database.

No RBPs affect the gene expression of RP13-279N23.2 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for RP13-279N23.2 is not available on ENCORE database.

14 RBPs can affect the splicing of RP13-279N23.2 :

The Knockdown/knockout RNA-Seq assay for RP13-279N23.2 is not avaliable on ENCORE database.