RP11-106M3.2

General Information

Gene Name : RP11-106M3.2
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-106M3.2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-106M3.2 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-106M3.2 RNA is bound by 17 proteins.

eCLIP assay for RP11-106M3.2 is not avaliable on ENCORE database.

17 proteins are bound to RP11-106M3.2 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	72636266	72636482	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.13407	9.51319	HepG2	DDX55
chr15	72638874	72638902	-	3'-UTR,CDS,intron-Distal	3.41939	3.21814	HepG2	SND1
chr15	72645431	72645492	-	3'-UTR,CDS,intron-Distal	3.10346	4.14640	HepG2	SND1
chr15	72668118	72668190	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.21959	8.26386	K562	YBX3
chr15	72642925	72642992	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.34404	7.66330	K562	SND1
chr15	72668191	72668229	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.71753	3.22721	K562	YBX3
chr15	72640035	72640100	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.94615	4.67599	HepG2	SND1
chr15	72645408	72645488	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.40251	6.60283	HepG2	RPS3
chr15	72636281	72636428	-	3'-UTR,CDS,intron-Distal	4.08380	8.51824	HepG2	RPS3
chr15	72641523	72641570	-	3'-UTR,CDS,intron-Distal	3.65518	7.59025	HepG2	SND1
chr15	72645407	72645448	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.43460	6.61971	K562	YBX3
chr15	72638787	72638858	-	intron-Distal,intron-Proximal	5.38085	7.36776	HepG2	PRPF8
chr15	72668110	72668176	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.01177	4.65800	HepG2	SND1
chr15	72636341	72636482	-	3'-UTR,CDS,intron-Distal	3.26391	3.20659	K562	SND1
chr15	72640045	72640140	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.59090	5.03105	K562	BUD13
chr15	72638918	72639008	-	3'-UTR,CDS,intron-Distal	4.62118	14.57985	HepG2	SND1
chr15	72668061	72668095	-	5'-UTR,CDS,intron-Distal	3.49972	3.32039	HepG2	PPIG
chr15	72648944	72648959	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.13995	3.54264	K562	SND1
chr15	72647898	72647935	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.57551	4.22917	HepG2	PPIG
chr15	72610192	72610349	-	intron-Distal	3.34955	3.59803	HepG2	PTBP1
chr15	72638961	72639004	-	3'-UTR,CDS,intron-Distal	3.39064	4.36355	HepG2	LIN28B
chr15	72637851	72637956	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.82624	4.57180	HepG2	AQR
chr15	72638866	72638882	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.44520	3.88509	K562	SND1
chr15	72638452	72638557	-	3'-UTR,intron-Distal,intron-Proximal	3.16795	3.78727	K562	PRPF8
chr15	72637786	72637808	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.08370	3.85049	HepG2	SND1
chr15	72668059	72668118	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.66358	9.54328	K562	YBX3
chr15	72636259	72636334	-	3'-UTR,intron-Distal,intron-Proximal	4.67384	17.87510	HepG2	LARP4
chr15	72641417	72641483	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.13872	5.02495	HepG2	SND1
chr15	72638575	72638666	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.63276	5.66624	K562	LIN28B
chr15	72638999	72639048	-	3'-UTR,CDS,intron-Distal	3.90638	5.65086	HepG2	BCLAF1
chr15	72636291	72636444	-	3'-UTR,CDS,intron-Distal	4.16488	13.44498	K562	LIN28B
chr15	72642889	72642992	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.27111	7.74278	HepG2	SND1
chr15	72638647	72638668	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.81005	5.68196	HepG2	BCLAF1
chr15	72636257	72636443	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.90618	14.57300	HepG2	LIN28B
chr15	72636270	72636364	-	3'-UTR,intron-Distal	4.23289	4.15341	HepG2	ZC3H11A
chr15	72642856	72642885	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.56913	9.17735	HepG2	SND1
chr15	72638604	72638668	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.07603	12.38664	HepG2	PPIG
chr15	72642856	72642925	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.48818	7.51320	K562	SND1
chr15	72636433	72636475	-	3'-UTR,CDS,intron-Distal	4.07248	6.36878	HepG2	SND1
chr15	72648865	72648956	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.06810	3.50849	HepG2	PPIG
chr15	72641570	72641601	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.37454	10.71711	HepG2	SND1
chr15	72641454	72641521	-	3'-UTR,CDS,intron-Distal	3.54852	5.59577	K562	SND1
chr15	72647898	72647928	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.06338	8.23251	HepG2	SND1
chr15	72638866	72638874	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.22845	4.14640	HepG2	SND1
chr15	72637850	72637879	-	3'-UTR,CDS,intron-Distal	3.93597	8.01308	HepG2	SND1
chr15	72648887	72648944	-	3'-UTR,CDS,intron-Distal	3.32123	3.79230	K562	SND1
chr15	72643473	72643498	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.23390	3.19472	HepG2	SND1
chr15	72643498	72643555	-	3'-UTR,CDS,intron-Distal	4.40241	3.91218	HepG2	SND1
chr15	72638497	72638584	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.53804	7.98498	HepG2	PRPF8
chr15	72668060	72668115	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.66215	5.28152	K562	SND1
chr15	72641417	72641454	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.00153	3.14823	K562	SND1
chr15	72636475	72636482	-	3'-UTR,CDS,intron-Distal	4.20766	4.12428	HepG2	SND1
chr15	72654144	72654198	-	intron-Distal	4.23366	3.60235	HepG2	HNRNPM
chr15	72640388	72640436	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.13995	3.20659	K562	SND1
chr15	72668116	72668189	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.75847	5.28221	K562	SND1
chr15	72637856	72637895	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.08912	3.98437	HepG2	RPS3
chr15	72640314	72640377	-	intron-Distal,intron-Proximal	4.31979	6.77156	K562	AQR
chr15	72640436	72640476	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.33965	5.43325	HepG2	SND1
chr15	72636386	72636445	-	3'-UTR,CDS,intron-Distal	3.14014	6.01570	HepG2	LARP4
chr15	72640436	72640477	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.58301	4.38503	K562	SND1
chr15	72637820	72637850	-	3'-UTR,CDS,intron-Distal	4.40670	3.19000	HepG2	SND1
chr15	72668185	72668300	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.54469	13.81062	K562	DDX3X
chr15	72637843	72637938	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.19220	3.01994	K562	BUD13
chr15	72638575	72638581	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.95218	8.69441	HepG2	SND1
chr15	72638618	72638666	-	3'-UTR,CDS,intron-Distal	3.22967	5.48605	HepG2	SND1
chr15	72633908	72633956	-	intron-Distal	3.99679	3.24593	HepG2	XPO5
chr15	72638581	72638595	-	3'-UTR,CDS,intron-Distal	4.13525	8.34613	HepG2	SND1
chr15	72645407	72645431	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.20343	3.48584	HepG2	SND1
chr15	72637891	72637961	-	intron-Distal,intron-Proximal	3.82359	4.00320	K562	AQR
chr15	72638999	72639052	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.02745	3.02060	K562	LIN28B
chr15	72668232	72668303	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.94430	23.07160	HepG2	DDX3X
chr15	72643472	72643519	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.00001	5.22159	K562	SND1
chr15	72638570	72638647	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.81005	11.95754	HepG2	BCLAF1
chr15	72637785	72637845	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.32123	4.13314	K562	SND1
chr15	72646031	72646079	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.01361	7.63354	HepG2	SND1
chr15	72648948	72649003	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.98033	3.31322	HepG2	SF3B4
chr15	72636334	72636386	-	3'-UTR,intron-Distal	6.00490	16.58735	HepG2	LARP4
chr15	72643471	72643557	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.31638	3.05460	HepG2	PPIG
chr15	72637879	72637893	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.85997	8.24547	HepG2	SND1
chr15	72638477	72638524	-	3'-UTR,intron-Distal,intron-Proximal	4.39001	5.47493	HepG2	BUD13
chr15	72638874	72638903	-	3'-UTR,CDS,intron-Distal	3.04345	3.91443	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-106M3.2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-106M3.2 is not available on ENCORE database.
24 RBPs can affect the levels of RP11-106M3.2.

The Knockdown/knockout RNA-Seq assay for RP11-106M3.2 is not available on ENCORE database.

24 RBPs can affect the gene expression of RP11-106M3.2 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-106M3.2	ENSG00000260729.1	31.19700	2.00000	3.96320	4.30600	3.13550	HepG2	BCCIP
RP11-106M3.2	ENSG00000260729.1	24.80830	1.23090	4.33290	3.65480	2.43170	HepG2	CSTF2
RP11-106M3.2	ENSG00000260729.1	33.66420	10.07590	1.74020	2.61180	2.00260	HepG2	DDX3X
RP11-106M3.2	ENSG00000260729.1	1.10210	13.29160	-3.59230	2.50570	1.57600	HepG2	DDX59
RP11-106M3.2	ENSG00000260729.1	53.25960	11.97960	2.15240	4.94310	4.08640	HepG2	DKC1
RP11-106M3.2	ENSG00000260729.1	34.87760	9.20580	1.92160	3.27020	2.57730	HepG2	EIF4A3
RP11-106M3.2	ENSG00000260729.1	40.33400	13.08140	1.62440	2.62060	1.94430	HepG2	HNRNPC
RP11-106M3.2	ENSG00000260729.1	26.43550	8.75170	1.59470	1.93410	1.36050	HepG2	IGF2BP2
RP11-106M3.2	ENSG00000260729.1	40.50890	2.97320	3.76810	6.56250	4.74370	HepG2	LIN28B
RP11-106M3.2	ENSG00000260729.1	20.44460	1.81540	3.49320	2.59450	1.53920	HepG2	NONO
RP11-106M3.2	ENSG00000260729.1	34.21230	9.77180	1.80770	2.88670	2.27940	HepG2	PUF60
RP11-106M3.2	ENSG00000260729.1	87.07880	12.98360	2.74550	5.46160	4.79570	HepG2	RBM22
RP11-106M3.2	ENSG00000260729.1	19.59520	3.16200	2.63150	2.07200	1.37350	HepG2	RPS2
RP11-106M3.2	ENSG00000260729.1	49.28010	14.66390	1.74860	3.74850	3.19240	HepG2	SRFBP1
RP11-106M3.2	ENSG00000260729.1	57.97700	12.73050	2.18710	6.61090	5.88250	HepG2	SSB
RP11-106M3.2	ENSG00000260729.1	35.99820	12.34580	1.54380	2.41890	1.73460	HepG2	TARDBP
RP11-106M3.2	ENSG00000260729.1	13.65620	1.30990	3.38190	2.20400	1.30320	HepG2	TFIP11
RP11-106M3.2	ENSG00000260729.1	25.43550	1.92620	3.72290	3.37090	2.57560	HepG2	XRN2
RP11-106M3.2	ENSG00000260729.1	17.78320	2.41590	2.87980	3.16360	1.76890	HepG2	ZRANB2
RP11-106M3.2	ENSG00000260729.1	7.64950	0.00000	99999.99990	2.01870	1.34000	K562	CPSF6
RP11-106M3.2	ENSG00000260729.1	21.72860	0.00000	99999.99990	4.96100	3.95100	K562	GRSF1
RP11-106M3.2	ENSG00000260729.1	12.08490	0.00000	99999.99990	3.30720	2.66240	K562	HNRNPC
RP11-106M3.2	ENSG00000260729.1	19.33510	1.32380	3.86830	2.46780	1.70310	K562	MTPAP
RP11-106M3.2	ENSG00000260729.1	16.22280	1.47320	3.46090	2.87650	2.11770	K562	NSUN2
RP11-106M3.2	ENSG00000260729.1	9.95660	0.00000	99999.99990	2.75550	1.52470	K562	PABPC1
RP11-106M3.2	ENSG00000260729.1	19.91880	2.24120	3.15170	2.54250	1.76110	K562	PUF60
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-106M3.2 is not available on ENCORE database.

8 RBPs can affect the splicing of RP11-106M3.2 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RP11-106M3.2	ENSG00000260729.1	chr15	-	72638867	72639051	72638575	72638666	72640026	72640099	-0.05500	0.00035	0.00888	excluded	K562	SRSF1
SE	RP11-106M3.2	ENSG00000260729.1	chr15	-	72638867	72639051	72638575	72638666	72640388	72640475	-0.11200	0.00000	0.00002	excluded	HepG2	U2AF1
SE	RP11-106M3.2	ENSG00000260729.1	chr15	-	72638017	72638117	72637786	72637891	72638575	72638666	0.18300	0.00000	0.00000	included	HepG2	HNRNPK
SE	RP11-106M3.2	ENSG00000260729.1	chr15	-	72638017	72638117	72637786	72637891	72638575	72638666	0.12400	0.00000	0.00000	included	HepG2	UCHL5
SE	RP11-106M3.2	ENSG00000260729.1	chr15	-	72638017	72638117	72637786	72637891	72638575	72638666	0.13800	0.00176	0.08955	included	HepG2	FTO
SE	RP11-106M3.2	ENSG00000260729.1	chr15	-	72654716	72654807	72648865	72648958	72668060	72668322	0.06400	0.00037	0.03168	included	HepG2	TIAL1
SE	RP11-106M3.2	ENSG00000260729.1	chr15	-	72638017	72638117	72637786	72637891	72638575	72638666	0.09000	0.00000	0.00001	included	K562	HNRNPK
SE	RP11-106M3.2	ENSG00000260729.1	chr15	-	72638017	72638117	72637786	72637891	72638575	72638666	0.09500	0.00000	0.00020	included	HepG2	HNRNPU
A3SS	RP11-106M3.2	ENSG00000260729.1	chr15	-	72648865	72648991	72648865	72648958	72668060	72668322	0.07700	0.00000	0.00001	longer	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-106M3.2

General Information

Functions

Localization

Domains (AlphaFold: RP11-106M3.2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-106M3.2 is not avaliable on ENCORE database.

17 proteins are bound to RP11-106M3.2 RNA:

eCLIP assay for RP11-106M3.2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-106M3.2 is not available on ENCORE database.

24 RBPs can affect the gene expression of RP11-106M3.2 :

The Knockdown/knockout RNA-Seq assay for RP11-106M3.2 is not available on ENCORE database.

8 RBPs can affect the splicing of RP11-106M3.2 :

The Knockdown/knockout RNA-Seq assay for RP11-106M3.2 is not avaliable on ENCORE database.