HOXB4

General Information

Gene Name       : HOXB4
Gene ID             : ENSG00000182742.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HOXB4)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HOXB4ENSG00000182742.51.463.152.30ENCSR000AEF
HepG2HOXB4ENSG00000182742.50.000.000.00ENCSR985KAT
K562HOXB4ENSG00000182742.519.8520.3020.08ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HOXB4 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HOXB4 RNA is bound by 17 proteins.  







eCLIP assay for HOXB4 is not avaliable on ENCORE database.





17 proteins are bound to HOXB4 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174665386946653895-3'-UTR,intron-Distal3.515334.24159K562RBM15
chr174665385946653934-3'-UTR,intron-Distal3.322776.83930K562FAM120A
chr174665397546654019-3'-UTR,intron-Distal3.999755.28523K562DDX51
chr174665372746653790-3'-UTR,intron-Distal3.052986.35635K562UCHL5
chr174665350846653562-3'-UTR,intron-Distal4.4159816.99650K562RBM15
chr174665318046653223-3'-UTR,intron-Distal3.364093.37083K562UPF1
chr174665369146653755-3'-UTR,intron-Distal4.7779417.30914K562RBM15
chr174665367546653689-3'-UTR,intron-Distal5.5489232.99335K562RBM15
chr174665297746653027-3'-UTR,intron-Distal,intron-Proximal3.6603911.84482K562TIA1
chr174665397046654021-3'-UTR,intron-Distal3.418918.48345K562RBM15
chr174665363646653675-3'-UTR,intron-Distal5.8003939.35108K562RBM15
chr174665398946653997-3'-UTR,intron-Distal3.661734.38394K562DROSHA
chr174665397346654018-3'-UTR,intron-Distal3.091573.95743K562AKAP8L
chr174665366746653763-3'-UTR,intron-Distal4.088324.47351K562GRWD1
chr174665396546654027-3'-UTR,intron-Distal4.1855812.23371K562GTF2F1
chr174665357346653665-3'-UTR,intron-Distal3.153053.45995K562IGF2BP2
chr174665385646653909-3'-UTR,intron-Distal4.450684.46422K562UPF1
chr174665394546654026-3'-UTR,intron-Distal4.5770912.33405K562DDX6
chr174665289446652965-3'-UTR,intron-Distal,intron-Proximal3.8510831.02690K562PUM2
chr174665726546657283-5'-UTR,intron-Distal6.0340910.58144K562DGCR8
chr174665700746657103-5'-UTR,intron-Distal4.5424414.61943K562DROSHA
chr174665722746657250-5'-UTR,intron-Distal5.840967.64819K562DROSHA
chr174665643846656515-5'-UTR,intron-Distal7.2151921.91174K562DROSHA
chr174665583046655896-5'-UTR,intron-Distal,intron-Proximal5.824218.67963K562DGCR8
chr174665643946656539-5'-UTR,intron-Distal3.700663.80752K562AKAP8L
chr174665700846657087-5'-UTR,intron-Distal5.4205914.05971K562DGCR8
chr174665736346657425-5'-UTR,intron-Distal6.5601416.34237K562DGCR8
chr174665728746657328-5'-UTR,intron-Distal6.8701213.47900K562DROSHA
chr174665723146657265-5'-UTR,intron-Distal8.4220779.73008K562DGCR8
chr174665582646655891-5'-UTR,intron-Distal,intron-Proximal4.7839415.87985K562DROSHA
chr174665710746657152-5'-UTR,intron-Distal4.069964.35288K562DGCR8
chr174665728346657330-5'-UTR,intron-Distal5.9446118.21481K562DGCR8
chr174665581146655905-5'-UTR,intron-Distal,intron-Proximal3.428653.21873K562GTF2F1
chr174665722346657231-5'-UTR,intron-Distal8.0962467.93834K562DGCR8
chr174665643546656507-5'-UTR,intron-Distal6.1950612.11094K562DGCR8
chr174665584846655890-5'-UTR,intron-Distal,intron-Proximal3.397663.12654K562SLTM
chr174665538046655415-CDS,intron-Distal4.709064.19577K562DGCR8
chr174665409546654125-CDS,intron-Distal3.371278.10769K562RBM15
chr174665520446655226-CDS,intron-Distal4.053548.65427K562AQR
chr174665412546654172-CDS,intron-Distal4.2562212.20960K562RBM15
chr174665433746654421-CDS,intron-Distal3.540077.16774K562AQR
chr174665750946657574-intron-Distal,intron-Proximal3.255373.77567K562NONO
chr174665479946654850-intron-Distal5.007678.51654K562DROSHA
chr174665517946655204-intron-Distal4.858799.56266K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HOXB4 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HOXB4 is not available on ENCORE database.

  • 30 RBPs can affect the levels of HOXB4.  








The Knockdown/knockout RNA-Seq assay for HOXB4 is not available on ENCORE database.





30 RBPs can affect the gene expression of HOXB4 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HOXB4ENSG00000182742.51675.411201967.43940-0.231802.607102.05280K562AGGF1
HOXB4ENSG00000182742.51093.474901613.81760-0.561606.244205.42240K562AQR
HOXB4ENSG00000182742.5784.894501005.22850-0.357003.547802.01570K562BCCIP
HOXB4ENSG00000182742.51946.858302990.43790-0.6192011.588609.67300K562CELF1
HOXB4ENSG00000182742.52047.254702350.61220-0.199302.181401.59150K562DDX47
HOXB4ENSG00000182742.51658.475601186.678500.482807.603106.49840K562EIF2S2
HOXB4ENSG00000182742.51597.687502432.24210-0.6063012.6693010.72800K562EIF4G2
HOXB4ENSG00000182742.51098.914601404.65250-0.354102.848501.98710K562FIP1L1
HOXB4ENSG00000182742.5558.58590828.83290-0.569303.669402.82970K562G3BP2
HOXB4ENSG00000182742.51223.940801655.87020-0.436105.953304.31930K562GLRX3
HOXB4ENSG00000182742.5931.302301321.00360-0.504305.909304.36970K562HNRNPA1
HOXB4ENSG00000182742.51118.398801449.75220-0.374403.533701.40050K562HNRNPH1
HOXB4ENSG00000182742.51299.95020972.794700.418104.215902.25610K562LSM11
HOXB4ENSG00000182742.5780.95740976.45000-0.322302.419601.56390K562MATR3
HOXB4ENSG00000182742.51438.522101740.93530-0.275303.497602.59250K562MTPAP
HOXB4ENSG00000182742.51168.697001752.58630-0.584605.712704.51120K562PCBP3
HOXB4ENSG00000182742.51415.293201065.273400.409804.118602.32160K562PHF6
HOXB4ENSG00000182742.51821.594402499.19270-0.456305.587503.64360K562PNPT1
HOXB4ENSG00000182742.5881.069401344.27990-0.609508.521207.14380K562POLR2G
HOXB4ENSG00000182742.51298.01230978.342600.407803.894502.79360K562PSIP1
HOXB4ENSG00000182742.51168.67250950.615900.297802.371001.74840K562PTBP1
HOXB4ENSG00000182742.51907.988702653.78400-0.476005.556004.40130K562PUF60
HOXB4ENSG00000182742.52092.094902822.54340-0.432005.890404.27950K562PUM1
HOXB4ENSG00000182742.51554.686801908.70580-0.296003.514702.60190K562SF3A3
HOXB4ENSG00000182742.5610.76480861.87120-0.496905.109603.92680K562SF3B4
HOXB4ENSG00000182742.51291.50090846.071000.610107.013905.16500K562SRFBP1
HOXB4ENSG00000182742.51331.769101955.51300-0.5542013.4920011.63320K562SRPK2
HOXB4ENSG00000182742.5695.30040931.92310-0.422603.756202.93810K562SRSF1
HOXB4ENSG00000182742.51278.111501961.23560-0.617706.381004.58580K562UTP3
HOXB4ENSG00000182742.51587.497601824.98390-0.201102.259301.48760K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HOXB4 is not available on ENCORE database.






No RBPs affect the alternative splcing events of HOXB4 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for HOXB4 is not avaliable on ENCORE database.