GTDC1

General Information

Gene Name       : GTDC1
Gene ID             : ENSG00000121964.14
Essential Gene : No

Functions

Localization

Domains (AlphaFold: GTDC1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878GTDC1ENSG00000121964.1411.3015.5313.41ENCSR000AEF
HepG2GTDC1ENSG00000121964.144.367.155.76ENCSR985KAT
K562GTDC1ENSG00000121964.147.429.038.22ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for GTDC1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • GTDC1 RNA is bound by 6 proteins.  







eCLIP assay for GTDC1 is not avaliable on ENCORE database.





6 proteins are bound to GTDC1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr2145089997145090107-5'-UTR,intron-Distal,intron-Proximal4.302164.52089HepG2NCBP2
chr2145069766145069853-intron-Distal3.717543.69388HepG2XPO5
chr2144893877144894024-intron-Distal4.953847.89455HepG2PTBP1
chr2145074906145074974-intron-Distal,intron-Proximal4.775855.39854K562PTBP1
chr2144839133144839242-intron-Distal4.219006.14899HepG2PCBP2
chr2145066964145067061-intron-Distal4.495405.85485K562KHSRP
chr2145071433145071530-intron-Distal3.446884.98593K562KHSRP
chr2144954795144954900-intron-Distal3.978454.02199K562HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for GTDC1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for GTDC1 is not available on ENCORE database.

  • 34 RBPs can affect the levels of GTDC1.  








The Knockdown/knockout RNA-Seq assay for GTDC1 is not available on ENCORE database.





34 RBPs can affect the gene expression of GTDC1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
GTDC1ENSG00000121964.10222.01400147.220900.592602.612501.64210HepG2ADAR
GTDC1ENSG00000121964.10394.71090259.400800.605503.019402.46630HepG2AKAP1
GTDC1ENSG00000121964.10260.76800194.183100.425202.022101.41810HepG2AUH
GTDC1ENSG00000121964.10303.08240206.813000.551302.814202.21090HepG2BOP1
GTDC1ENSG00000121964.10278.43170203.773300.450302.666801.93650HepG2DAZAP1
GTDC1ENSG00000121964.10165.51120248.51910-0.586402.160101.60030HepG2DDX3X
GTDC1ENSG00000121964.10324.80010222.947400.542703.389802.73410HepG2ETF1
GTDC1ENSG00000121964.1095.55090215.23760-1.171606.262105.32550HepG2GPKOW
GTDC1ENSG00000121964.10231.22200137.276600.752103.156301.96240HepG2GRSF1
GTDC1ENSG00000121964.10134.39680207.74430-0.628302.848102.11340HepG2IGF2BP1
GTDC1ENSG00000121964.10383.56010258.798900.567502.728601.90500HepG2LARP4
GTDC1ENSG00000121964.10130.94740228.83850-0.805303.514402.77470HepG2MAGOH
GTDC1ENSG00000121964.10124.97540235.57330-0.914503.370102.67390HepG2NCBP2
GTDC1ENSG00000121964.10228.98960166.209800.462202.124501.43900HepG2PRPF4
GTDC1ENSG00000121964.10145.46210204.77390-0.493402.194101.65350HepG2PUM1
GTDC1ENSG00000121964.10369.45550185.600100.993105.010704.07680HepG2RAVER1
GTDC1ENSG00000121964.10324.86210186.342900.801806.160305.46170HepG2RBM22
GTDC1ENSG00000121964.10273.70410182.313700.586102.292501.43110HepG2RPS10
GTDC1ENSG00000121964.10345.21620210.467800.713805.616704.97240HepG2SRFBP1
GTDC1ENSG00000121964.10456.71260218.754801.061903.877902.67100HepG2SRSF3
GTDC1ENSG00000121964.1062.33610104.90770-0.751002.266801.35730HepG2TFIP11
GTDC1ENSG00000121964.1096.74530160.72110-0.732303.234602.70040HepG2TIAL1
GTDC1ENSG00000121964.10324.73420192.837600.751804.027103.27510HepG2U2AF1
GTDC1ENSG00000121964.10371.66140186.373600.9957010.028809.00220HepG2UTP3
GTDC1ENSG00000121964.10390.15300255.572000.610204.031402.79670K562AKAP8
GTDC1ENSG00000121964.10395.65610242.023600.709005.051604.15790K562AKAP8L
GTDC1ENSG00000121964.10400.59030255.649400.647902.745201.69070K562CNOT7
GTDC1ENSG00000121964.10306.55460216.040700.504702.148901.33400K562HNRNPM
GTDC1ENSG00000121964.10345.00330201.689500.774403.958902.84890K562NAA15
GTDC1ENSG00000121964.10375.45710245.606000.612202.474501.32270K562PABPC1
GTDC1ENSG00000121964.10308.40180424.48750-0.460902.839001.75650K562PUM1
GTDC1ENSG00000121964.10282.99790415.91420-0.555503.818202.68640K562PUM2
GTDC1ENSG00000121964.10626.26500240.050901.3833018.2549016.89270K562PUS1
GTDC1ENSG00000121964.10467.06790233.868700.9978011.154409.98410K562RBM15
GTDC1ENSG00000121964.10189.08740115.359100.712802.915101.86960K562SUPV3L1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for GTDC1 is not available on ENCORE database.





4 RBPs can affect the splicing of GTDC1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEGTDC1ENSG00000121964.10chr2-1449685801449688041449661691449663711449690811449691460.202000.000000.00042includedK562FMR1
SEGTDC1ENSG00000121964.10chr2-1449685801449688041449661691449663711449690811449691460.208000.001770.01974includedK562AQR
SEGTDC1ENSG00000121964.10chr2-1449685801449688041449661691449663711449690811449691460.112000.001110.09565includedK562CPSF6
SEGTDC1ENSG00000121964.10chr2-1449685801449688041449661691449663711449690811449691460.157000.000050.00338includedK562SF3B1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for GTDC1 is not avaliable on ENCORE database.