EFCAB4B

General Information

Gene Name       : EFCAB4B
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: EFCAB4B)


Antibody Validation


Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for EFCAB4B is not avaliable on ENCORE database.



Proteins bound to RNA

  • EFCAB4B RNA is bound by 4 proteins.  







eCLIP assay for EFCAB4B is not avaliable on ENCORE database.





4 proteins are bound to EFCAB4B RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr1237880903788218-CDS,intron-Distal3.310873.43213K562UCHL5
chr1237208133720936-intron-Distal4.3930811.16945K562PTBP1
chr1237502083750239-intron-Distal5.031236.47005K562NSUN2
chr1237224753722590-intron-Distal6.6807025.07347K562UPF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for EFCAB4B is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for EFCAB4B is not available on ENCORE database.

  • 20 RBPs can affect the levels of EFCAB4B.  








The Knockdown/knockout RNA-Seq assay for EFCAB4B is not available on ENCORE database.





20 RBPs can affect the gene expression of EFCAB4B :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
EFCAB4BENSG00000130038.529.927506.298402.248303.272202.57910HepG2EIF4A3
EFCAB4BENSG00000130038.516.203303.454802.229502.188201.68560HepG2SRSF9
EFCAB4BENSG00000130038.525.295309.482801.415401.861801.41980HepG2SSB
EFCAB4BENSG00000130038.5221.56100330.25690-0.575903.619702.98630K562AGGF1
EFCAB4BENSG00000130038.5246.24310343.64770-0.480802.471001.85310K562AKAP8L
EFCAB4BENSG00000130038.5209.74840409.18610-0.964106.540605.70110K562AQR
EFCAB4BENSG00000130038.5100.59170202.95840-1.012705.193603.98720K562BOP1
EFCAB4BENSG00000130038.5246.66560459.97190-0.899004.960003.48530K562CNOT7
EFCAB4BENSG00000130038.5200.46780280.92970-0.486802.280201.50970K562FIP1L1
EFCAB4BENSG00000130038.5132.77540219.59050-0.725803.436902.48070K562FMR1
EFCAB4BENSG00000130038.5119.45290186.13740-0.639902.441601.58570K562FTO
EFCAB4BENSG00000130038.5272.41550364.69490-0.420902.078401.37390K562KIF1C
EFCAB4BENSG00000130038.5323.37590236.262700.452702.404801.61850K562MAGOH
EFCAB4BENSG00000130038.5259.20260358.96530-0.469802.236001.48940K562PCBP3
EFCAB4BENSG00000130038.5232.61970318.92340-0.455202.214001.48330K562PPIG
EFCAB4BENSG00000130038.5250.02140332.06200-0.409402.035901.51290K562RBM15
EFCAB4BENSG00000130038.5118.93740195.97190-0.720402.832101.84730K562SF3B1
EFCAB4BENSG00000130038.5336.81130225.040600.581703.535502.74350K562SRSF1
EFCAB4BENSG00000130038.5166.88270246.97310-0.565502.480601.52160K562UCHL5
EFCAB4BENSG00000130038.5264.84320351.10400-0.406802.345301.68090K562UPF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for EFCAB4B is not available on ENCORE database.





2 RBPs can affect the splicing of EFCAB4B :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEEFCAB4BENSG00000130038.5chr12-384210738423763822402382248338621803862366-0.430000.002280.05892excludedK562AKAP8L
MXEEFCAB4BENSG00000130038.5chr12-37537603753806375770737577793750897375100437633773763389-0.371000.001540.057612includedK562FXR1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for EFCAB4B is not avaliable on ENCORE database.