DNAJC17

General Information

Gene Name       : DNAJC17
Gene ID             : ENSG00000104129.9
Essential Gene : Yes

Functions

Localization(RBPImage: DNAJC17)

Domains (AlphaFold: DNAJC17)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878DNAJC17ENSG00000104129.933.2542.7638.00ENCSR000AEF
HepG2DNAJC17ENSG00000104129.920.5921.1620.88ENCSR985KAT
K562DNAJC17ENSG00000104129.937.0746.1341.60ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
DNAJC17K562shRNABGKLV34-15,BGKLV34-16BGKLV34-1,BGKLV34-2no clear band,NotSatisfiedENCODE3
DNAJC17HepG2shRNABGHLV33-11,BGHLV33-12BGHLV33-1,BGHLV33-2no clear band,NotSatisfiedENCODE3


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  
    DNAJC17: Click to RBP Image Database
  • Cytoplasm
  • Cytoskeleton
  • Actin












    • RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








    RNA Targets

    • eCLIP assay for DNAJC17 is not avaliable on ENCORE database.



    Proteins bound to RNA
    • DNAJC17 RNA is bound by 7 proteins.  







    eCLIP assay for DNAJC17 is not avaliable on ENCORE database.





    7 proteins are bound to DNAJC17 RNA:

    Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
    chr154106593041065997-3'-UTR,CDS,intron-Distal,intron-Proximal3.391854.24993HepG2PPIG
    chr154106588541065954-3'-UTR,CDS,intron-Distal,intron-Proximal4.709024.35676HepG2PRPF8
    chr154107174441071795-3'-UTR,CDS,intron-Distal,intron-Proximal3.466163.32039HepG2PPIG
    chr154106772241067783-3'-UTR,CDS,intron-Distal,intron-Proximal4.106606.49249HepG2EFTUD2
    chr154106875041068828-3'-UTR,CDS,intron-Distal,intron-Proximal3.749683.73413HepG2PPIG
    chr154106838841068491-3'-UTR,CDS,intron-Distal,intron-Proximal3.239354.92880K562ZNF622
    chr154106769341067781-3'-UTR,CDS,intron-Distal,intron-Proximal5.1105613.10719HepG2PRPF8
    chr154106774441067820-3'-UTR,CDS,intron-Distal,intron-Proximal3.791624.21358HepG2U2AF2
    chr154106168841061827-intron-Distal3.891523.48722HepG2PRPF4
    chr154106805641068135-intron-Distal4.384433.85435K562PRPF8
    chr154109948941099542-intron-Distal4.778904.40230HepG2RBM22
    ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




    eCLIP assay for DNAJC17 is not avaliable on ENCORE database.



    Diffrential Expression

    • The Knockdown/knockout assay for DNAJC17 is not available on ENCORE database.

    • 34 RBPs can affect the levels of DNAJC17.  








    The Knockdown/knockout RNA-Seq assay for DNAJC17 is not available on ENCORE database.





    34 RBPs can affect the gene expression of DNAJC17 :

    Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
    DNAJC17ENSG00000104129.5175.06510122.456600.515502.163201.56420HepG2CKAP4
    DNAJC17ENSG00000104129.5158.79710113.269100.487302.033101.30820HepG2DDX19B
    DNAJC17ENSG00000104129.5181.29940106.347200.769502.983901.92520HepG2GNB2L1
    DNAJC17ENSG00000104129.5239.50130184.196300.378701.963501.38400HepG2HNRNPL
    DNAJC17ENSG00000104129.5161.45390108.360200.575202.409901.84120HepG2HNRNPU
    DNAJC17ENSG00000104129.5122.28760191.44230-0.646602.496901.92660HepG2PUF60
    DNAJC17ENSG00000104129.5259.72970171.746900.596602.706202.04000HepG2SF3A3
    DNAJC17ENSG00000104129.5177.45500105.256800.753403.544102.99270HepG2TIAL1
    DNAJC17ENSG00000104129.5280.65210167.515100.744405.762405.04810HepG2ZNF622
    DNAJC17ENSG00000104129.5140.37420250.02850-0.832804.990104.10150K562AKAP8L
    DNAJC17ENSG00000104129.5180.08310366.59290-1.025507.888306.98240K562AQR
    DNAJC17ENSG00000104129.5114.84950203.01340-0.821803.760502.74170K562BOP1
    DNAJC17ENSG00000104129.5407.10130529.28200-0.378602.502201.57540K562CELF1
    DNAJC17ENSG00000104129.5120.87520186.16370-0.623102.443601.58710K562FTO
    DNAJC17ENSG00000104129.5191.19110136.336800.487701.944901.42000K562FXR1
    DNAJC17ENSG00000104129.553.21750101.24130-0.927802.705302.00810K562G3BP2
    DNAJC17ENSG00000104129.5197.06270301.51220-0.613603.940902.58380K562GLRX3
    DNAJC17ENSG00000104129.5137.12970206.09010-0.587702.369401.63260K562GPKOW
    DNAJC17ENSG00000104129.5174.60640261.65640-0.583603.210102.05180K562HNRNPA1
    DNAJC17ENSG00000104129.5133.50090228.03850-0.772403.920603.22510K562HNRNPC
    DNAJC17ENSG00000104129.5181.34780265.36390-0.549202.525201.74040K562KIF1C
    DNAJC17ENSG00000104129.5109.78520175.98060-0.680702.187001.36760K562KRR1
    DNAJC17ENSG00000104129.5194.86020316.99890-0.702005.293104.19940K562MTPAP
    DNAJC17ENSG00000104129.5224.12430352.22460-0.652205.339404.35160K562NSUN2
    DNAJC17ENSG00000104129.5298.04200469.56540-0.655804.699303.63930K562PUF60
    DNAJC17ENSG00000104129.5121.37830248.00290-1.030806.198905.42530K562PUS1
    DNAJC17ENSG00000104129.5152.79370241.60560-0.661103.608502.94480K562RBM15
    DNAJC17ENSG00000104129.5210.11860347.54040-0.726005.817504.66870K562SF3A3
    DNAJC17ENSG00000104129.599.46550196.00650-0.978604.556103.29120K562SF3B1
    DNAJC17ENSG00000104129.5256.97160356.06130-0.470503.066902.08610K562SRPK2
    DNAJC17ENSG00000104129.5188.80770276.08190-0.548202.512601.32330K562STAU1
    DNAJC17ENSG00000104129.557.59900101.44120-0.816502.594001.81540K562U2AF2
    DNAJC17ENSG00000104129.5242.76090373.47030-0.621504.949704.01940K562UPF1
    DNAJC17ENSG00000104129.5135.68740251.40540-0.889703.507501.99490K562UTP18
    DNAJC17ENSG00000104129.5171.07970319.56810-0.901507.163405.71340K562WDR3
    DNAJC17ENSG00000104129.5257.90660412.95910-0.679205.137703.90340K562ZC3H8
    Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".






    The Knockdown/knockout RNA-Seq assay for DNAJC17 is not available on ENCORE database.





    11 RBPs can affect the splicing of DNAJC17 :

    Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
    SEDNAJC17ENSG00000104129.5chr15-410721254107219541071742410718014109956641099675-0.051000.005620.06802excludedK562PUS1
    SEDNAJC17ENSG00000104129.5chr15-410712814107133641068739410688254107142041071508-0.067000.000060.05134excludedK562AARS
    A3SSDNAJC17ENSG00000104129.5chr15-410683934106859941068393410684904106873941068825-0.305000.000370.08918shorterHepG2HNRNPU
    A3SSDNAJC17ENSG00000104129.5chr15-4106839341068599410683934106849041068739410688250.240000.000550.05057longerK562AKAP8L
    A3SSDNAJC17ENSG00000104129.5chr15-4106839341068599410683934106849041068739410688250.453000.003310.09492longerK562U2AF2
    A3SSDNAJC17ENSG00000104129.5chr15-410683934106859941068393410684904106873941068825-0.176000.000280.03854shorterK562FXR1
    A3SSDNAJC17ENSG00000104129.5chr15-4106839341068599410683934106849041068739410688250.409000.000000.00019longerHepG2U2AF2
    A3SSDNAJC17ENSG00000104129.5chr15-4106839341068599410683934106849041068739410688250.245000.000480.02660longerK562PUS1
    A3SSDNAJC17ENSG00000104129.5chr15-4106839341068599410683934106849041068739410688250.391000.001980.07586longerK562U2AF1
    A3SSDNAJC17ENSG00000104129.5chr15-4106839341068599410683934106849041068739410688250.305000.000010.00149longerK562RBM15
    A3SSDNAJC17ENSG00000104129.5chr15-410683934106859941068393410684904106873941068825-0.360000.000020.01060shorterHepG2HNRNPC
    A3SSDNAJC17ENSG00000104129.5chr15-4106839341068599410683934106849041068739410688250.284000.000020.00415longerHepG2PCBP1
    A3SSDNAJC17ENSG00000104129.5chr15-4106839341068599410683934106849041068739410688250.158000.001010.06889longerHepG2SF3B4
    A5SSDNAJC17ENSG00000104129.5chr15-4107128141071508410714204107150841068739410688250.106000.000160.00836longerK562PUS1
    MXEDNAJC17ENSG00000104129.5chr15-41068393410684904106854941068599410677504106779441068739410688250.250000.003080.050821includedHepG2U2AF1
    MXEDNAJC17ENSG00000104129.5chr15-41068393410684904106854941068599410677504106779441068739410688250.359000.000010.000131includedHepG2U2AF2

    *: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
    **: "-log(0)" was displayed as "99999.99999".





    The Knockdown/knockout RNA-Seq assay for DNAJC17 is not avaliable on ENCORE database.