CT49

General Information

Gene Name : CT49
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CT49)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CT49 is not avaliable on ENCORE database.

Proteins bound to RNA

CT49 RNA is bound by 12 proteins.

eCLIP assay for CT49 is not avaliable on ENCORE database.

12 proteins are bound to CT49 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	12630127	12630300	+	intron-Distal	4.54616	11.58574	K562	KHSRP
chr5	12611609	12611642	+	intron-Distal	3.95725	3.01456	K562	EXOSC5
chr5	12742640	12742745	+	intron-Distal	3.06224	3.70419	K562	KHDRBS1
chr5	12773911	12773965	+	intron-Distal	3.98390	3.65589	K562	SAFB2
chr5	12717957	12718024	+	intron-Distal	4.75994	4.01415	K562	LSM11
chr5	12728559	12728619	+	intron-Distal	4.19463	4.15306	K562	SAFB2
chr5	12608625	12608679	+	intron-Distal	3.87309	5.80877	K562	EXOSC5
chr5	12729413	12729478	+	intron-Distal	4.49666	5.20871	K562	SAFB2
chr5	12717880	12717947	+	intron-Distal	3.66066	5.85150	K562	LSM11
chr5	12686440	12686516	+	intron-Distal	4.61471	6.28383	K562	KHSRP
chr5	12610230	12610260	+	intron-Distal	3.30482	3.72952	K562	EXOSC5
chr5	12612510	12612570	+	intron-Distal	3.52287	3.72952	K562	EXOSC5
chr5	12612100	12612160	+	intron-Distal	4.51499	3.30687	K562	EXOSC5
chr5	12740030	12740087	+	intron-Distal	3.82615	3.12651	K562	SAFB2
chr5	12610144	12610161	+	intron-Distal	4.15504	3.30687	K562	EXOSC5
chr5	12613257	12613310	+	intron-Distal	3.47632	3.43829	K562	EXOSC5
chr5	12743051	12743143	+	intron-Distal	3.26157	4.71076	K562	PTBP1
chr5	12686516	12686587	+	intron-Distal	4.67374	6.09994	K562	KHSRP
chr5	12620590	12620617	+	intron-Distal	4.20850	3.59909	K562	EXOSC5
chr5	12634257	12634376	+	intron-Distal	3.71715	5.12089	K562	HNRNPL
chr5	12730530	12730603	+	intron-Distal	3.57867	8.62170	K562	SAFB2
chr5	12795151	12795205	+	intron-Distal	3.35133	3.31097	K562	SLTM
chr5	12714466	12714524	+	intron-Distal	4.23548	3.91018	K562	KHDRBS1
chr5	12728357	12728435	+	intron-Distal	4.56995	6.48449	K562	SAFB2
chr5	12639285	12639367	+	intron-Distal	3.94999	3.95960	K562	SAFB2
chr5	12646471	12646484	+	intron-Distal	3.83514	3.49896	K562	KHDRBS1
chr5	12655230	12655341	+	intron-Distal	5.68777	6.23225	K562	QKI
chr5	12730118	12730179	+	intron-Distal	3.43832	4.95618	K562	SAFB2
chr5	12727642	12727701	+	intron-Distal	3.19874	3.55860	K562	SAFB2
chr5	12655049	12655118	+	intron-Distal	3.40033	8.65519	K562	KHSRP
chr5	12745152	12745226	+	intron-Distal	4.01862	6.16207	K562	TARDBP
chr5	12610038	12610066	+	intron-Distal	4.17754	3.01456	K562	EXOSC5
chr5	12773314	12773381	+	intron-Distal	3.03366	3.55860	K562	SAFB2
chr5	12620632	12620674	+	intron-Distal	4.45725	4.48560	K562	EXOSC5
chr5	12775811	12775886	+	intron-Distal	3.09140	3.86112	K562	SAFB2
chr5	12605440	12605539	+	intron-Distal	3.37556	4.74884	K562	SAFB2
chr5	12727891	12727969	+	intron-Distal	4.46871	6.05788	K562	SAFB2
chr5	12751464	12751558	+	intron-Distal	4.51047	5.75613	K562	KHDRBS1
chr5	12611942	12611985	+	intron-Distal	4.54602	5.44433	K562	EXOSC5
chr5	12614427	12614524	+	intron-Distal	3.16220	3.51696	K562	KHSRP
chr5	12654603	12654700	+	intron-Distal,intron-Proximal	3.94295	8.11138	K562	KHSRP
chr5	12619675	12619734	+	intron-Distal	3.32119	7.15338	K562	EXOSC5
chr5	12781339	12781431	+	intron-Distal	5.70338	19.11918	K562	PTBP1
chr5	12646377	12646428	+	intron-Distal	4.24057	5.15185	K562	KHDRBS1
chr5	12740773	12740821	+	intron-Distal	3.63895	3.12651	K562	SAFB2
chr5	12609065	12609111	+	intron-Distal	4.43102	5.12361	K562	EXOSC5
chr5	12619267	12619288	+	intron-Distal	4.58302	5.76606	K562	EXOSC5
chr5	12615065	12615141	+	intron-Distal	4.25816	5.42824	K562	SAFB2
chr5	12628539	12628606	+	intron-Distal	5.32485	7.47823	K562	QKI
chr5	12600156	12600211	+	intron-Distal	5.02460	5.39854	K562	PTBP1
chr5	12756195	12756327	+	intron-Distal	4.65073	6.68667	K562	SAFB2
chr5	12619394	12619427	+	intron-Distal	3.43102	4.31658	K562	EXOSC5
chr5	12655118	12655164	+	intron-Distal	4.77456	6.73684	K562	KHSRP
chr5	12619582	12619631	+	intron-Distal	5.82895	13.98677	K562	EXOSC5
chr5	12610567	12610616	+	intron-Distal	4.44425	7.91405	K562	EXOSC5
chr5	12611376	12611417	+	intron-Distal	4.06476	6.71225	K562	EXOSC5
chr5	12748259	12748300	+	intron-Distal	3.71309	4.22415	K562	PTBP1
chr5	12650649	12650741	+	intron-Distal	6.09449	20.33758	K562	QKI
chr5	12610700	12610771	+	intron-Distal	4.28329	8.51196	K562	EXOSC5
chr5	12610459	12610492	+	intron-Distal	4.36093	3.59909	K562	EXOSC5
chr5	12610651	12610683	+	intron-Distal	4.65177	5.76606	K562	EXOSC5
chr5	12799892	12799970	+	intron-Distal	4.36595	5.96177	K562	KHDRBS1
chr5	12619493	12619531	+	intron-Distal	5.03647	7.38793	K562	EXOSC5
chr5	12794462	12794569	+	intron-Distal	3.69358	4.58695	K562	SLTM
chr5	12620153	12620233	+	intron-Distal	4.47422	8.51196	K562	EXOSC5
chr5	12739911	12739979	+	intron-Distal	3.25395	4.48636	K562	SAFB2
chr5	12610981	12611029	+	intron-Distal	3.98670	6.41051	K562	EXOSC5
chr5	12609641	12609702	+	intron-Distal	4.95186	6.73640	K562	EXOSC5
chr5	12651956	12652036	+	intron-Distal	4.60989	6.45754	K562	TARDBP
chr5	12730639	12730708	+	intron-Distal	4.54559	5.79169	K562	SAFB2
chr5	12766429	12766533	+	intron-Distal	4.25906	4.07991	K562	ILF3
chr5	12748300	12748330	+	intron-Distal	5.06833	6.19339	K562	PTBP1
chr5	12619820	12619853	+	intron-Distal	3.34159	5.02053	K562	EXOSC5
chr5	12730604	12730639	+	intron-Distal	3.93044	3.65589	K562	SAFB2
chr5	12624577	12624642	+	intron-Distal	3.95192	3.22483	K562	SAFB2
chr5	12611375	12611463	+	intron-Distal	4.98367	7.52645	K562	TARDBP
chr5	12577687	12577769	+	intron-Distal	3.79141	3.46942	K562	KHDRBS1
chr5	12715360	12715455	+	intron-Distal	4.35980	5.30489	K562	TARDBP
chr5	12646484	12646517	+	intron-Distal	3.17143	3.90716	K562	KHDRBS1
chr5	12623740	12623803	+	intron-Distal	3.34926	3.34940	K562	HNRNPM
chr5	12740692	12740773	+	intron-Distal	4.32462	5.81661	K562	SAFB2
chr5	12648145	12648234	+	intron-Distal	5.49128	17.49354	K562	PTBP1
chr5	12587221	12587315	+	intron-Distal	4.10568	4.04407	K562	HNRNPL
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for CT49 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for CT49 is not available on ENCORE database.
13 RBPs can affect the levels of CT49.

The Knockdown/knockout RNA-Seq assay for CT49 is not available on ENCORE database.

13 RBPs can affect the gene expression of CT49 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CT49	ENSG00000248131.1	82.74850	134.28730	-0.69850	2.46760	1.42650	K562	CPEB4
CT49	ENSG00000248131.1	35.38600	76.16150	-1.10590	2.94680	2.13750	K562	CPSF6
CT49	ENSG00000248131.1	70.55930	112.41850	-0.67200	2.01960	1.31570	K562	EIF4A3
CT49	ENSG00000248131.1	73.98960	125.56380	-0.76300	2.71170	1.66930	K562	HNRNPL
CT49	ENSG00000248131.1	66.63950	104.64860	-0.65110	1.97520	1.33160	K562	NSUN2
CT49	ENSG00000248131.1	65.02690	111.61650	-0.77940	2.29330	1.40750	K562	PCBP2
CT49	ENSG00000248131.1	55.05680	99.21390	-0.84960	2.35530	1.52710	K562	PSIP1
CT49	ENSG00000248131.1	59.99610	119.47320	-0.99370	3.69270	2.88140	K562	SRSF1
CT49	ENSG00000248131.1	192.22370	90.33160	1.08940	3.28900	1.69270	K562	SUPT6H
CT49	ENSG00000248131.1	47.49780	95.42480	-1.00650	2.95690	1.98730	K562	TIAL1
CT49	ENSG00000248131.1	38.07890	92.60950	-1.28220	4.20700	2.80080	K562	U2AF1
CT49	ENSG00000248131.1	44.81160	95.65420	-1.09400	3.88240	2.93100	K562	U2AF2
CT49	ENSG00000248131.1	63.83180	110.95980	-0.79770	2.89530	2.16020	K562	UPF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CT49

General Information

Functions

Localization

Domains (AlphaFold: CT49)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CT49 is not avaliable on ENCORE database.

12 proteins are bound to CT49 RNA:

eCLIP assay for CT49 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CT49 is not available on ENCORE database.

13 RBPs can affect the gene expression of CT49 :

The Knockdown/knockout RNA-Seq assay for CT49 is not available on ENCORE database.

No RBPs affect the alternative splcing events of CT49 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for CT49 is not avaliable on ENCORE database.