COLCA1

General Information

Gene Name       : COLCA1
Gene ID             : ENSG00000196167.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: COLCA1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878COLCA1ENSG00000196167.90.010.040.03ENCSR000AEF
HepG2COLCA1ENSG00000196167.90.530.510.52ENCSR985KAT
K562COLCA1ENSG00000196167.90.000.000.00ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for COLCA1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • COLCA1 RNA is bound by 1 proteins.  







eCLIP assay for COLCA1 is not avaliable on ENCORE database.





1 proteins are bound to COLCA1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr11111167286111167383-3'-UTR,5'-UTR,intron-Distal3.466074.19039HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for COLCA1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for COLCA1 is not available on ENCORE database.

  • 49 RBPs can affect the levels of COLCA1.  








The Knockdown/knockout RNA-Seq assay for COLCA1 is not available on ENCORE database.





49 RBPs can affect the gene expression of COLCA1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
COLCA1ENSG00000196167.537.26500128.60060-1.787007.570506.73560HepG2AKAP1
COLCA1ENSG00000196167.590.6851051.779600.808402.216301.41180HepG2BCLAF1
COLCA1ENSG00000196167.592.9869052.735300.818202.183201.64660HepG2BOP1
COLCA1ENSG00000196167.5166.5696078.192301.090904.577903.30860HepG2CCAR1
COLCA1ENSG00000196167.541.85710101.09280-1.272104.141003.20650HepG2CIRBP
COLCA1ENSG00000196167.5232.2866048.412802.2623019.9970018.36260HepG2CPSF6
COLCA1ENSG00000196167.5199.98620100.448300.993306.347505.29140HepG2DAZAP1
COLCA1ENSG00000196167.597.9577044.391701.141804.106102.42500HepG2DDX28
COLCA1ENSG00000196167.5147.6833081.295500.861203.526902.39050HepG2DDX5
COLCA1ENSG00000196167.557.27200105.82440-0.885802.525401.93400HepG2DDX6
COLCA1ENSG00000196167.594.6042052.856500.839702.514601.57880HepG2DHX30
COLCA1ENSG00000196167.587.6209054.320400.689702.068801.48920HepG2DNAJC2
COLCA1ENSG00000196167.5111.8162063.780200.809802.488601.43640HepG2EFTUD2
COLCA1ENSG00000196167.5315.58080145.272101.1192010.360909.31850HepG2ETF1
COLCA1ENSG00000196167.5143.2572067.893601.077204.687702.07840HepG2EXOSC5
COLCA1ENSG00000196167.5138.7926048.497901.516804.461703.17860HepG2FTO
COLCA1ENSG00000196167.5315.52790105.222501.5842014.3374012.88030HepG2G3BP1
COLCA1ENSG00000196167.598.7138055.326200.835202.232901.64780HepG2HNRNPA1
COLCA1ENSG00000196167.5180.5899092.296900.968305.052003.85210HepG2HNRNPA2B1
COLCA1ENSG00000196167.5251.3757091.511901.4577014.0461012.63950HepG2HNRNPL
COLCA1ENSG00000196167.5110.4764052.370301.076803.481902.78540HepG2HNRNPLL
COLCA1ENSG00000196167.5116.5224061.134300.930503.745003.05010HepG2HNRNPU
COLCA1ENSG00000196167.5109.3386059.679000.873402.499701.81030HepG2IGF2BP1
COLCA1ENSG00000196167.5102.8279062.446500.719402.411401.72150HepG2ILF2
COLCA1ENSG00000196167.5177.02750107.580500.718502.526801.57790HepG2KHSRP
COLCA1ENSG00000196167.5150.8815090.640700.735102.441001.30740HepG2LIN28B
COLCA1ENSG00000196167.5163.80840103.286900.665302.358201.60800HepG2MSI2
COLCA1ENSG00000196167.5135.1542053.417001.339104.665203.38650HepG2MTPAP
COLCA1ENSG00000196167.5210.8362099.602301.081806.844505.65180HepG2NOL12
COLCA1ENSG00000196167.529.8152089.75960-1.590003.916102.84640HepG2PABPC1
COLCA1ENSG00000196167.5215.45530104.009301.050605.887304.84680HepG2PABPC4
COLCA1ENSG00000196167.5137.3893060.511201.182905.932004.76300HepG2PARN
COLCA1ENSG00000196167.5116.7496054.526701.098302.639601.91840HepG2PPIL4
COLCA1ENSG00000196167.5112.3260045.212501.312804.879203.83970HepG2PRPF8
COLCA1ENSG00000196167.5180.4371079.691201.178906.817306.03350HepG2PTBP1
COLCA1ENSG00000196167.5209.90360100.907701.056607.320906.45170HepG2PUM1
COLCA1ENSG00000196167.556.49900100.84150-0.835802.715002.05040HepG2PUM2
COLCA1ENSG00000196167.5244.1110092.042201.4071013.2356012.06330HepG2PUS1
COLCA1ENSG00000196167.5175.7077086.310401.025505.127104.31680HepG2QKI
COLCA1ENSG00000196167.537.4983090.33430-1.268403.226502.46840HepG2RAVER1
COLCA1ENSG00000196167.5201.07790104.136600.949204.149702.91660HepG2RBM27
COLCA1ENSG00000196167.5158.9734092.798100.776502.888201.55040HepG2SART3
COLCA1ENSG00000196167.535.76800130.28580-1.864903.368402.62330HepG2SF3A3
COLCA1ENSG00000196167.5199.3486082.971201.264508.147707.21490HepG2SF3B4
COLCA1ENSG00000196167.5106.5671057.675800.885602.201701.50900HepG2SNRNP70
COLCA1ENSG00000196167.5184.3558059.556601.6301011.4475010.19710HepG2SRSF7
COLCA1ENSG00000196167.5142.6415051.052201.482207.302406.20020HepG2TARDBP
COLCA1ENSG00000196167.5124.2731071.526700.796902.952602.09210HepG2TIA1
COLCA1ENSG00000196167.5120.3816059.399501.019004.202203.61400HepG2TIAL1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for COLCA1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of COLCA1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for COLCA1 is not avaliable on ENCORE database.