CCDC134

General Information

Gene Name       : CCDC134
Gene ID             : ENSG00000100147.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCDC134)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878CCDC134ENSG00000100147.135.747.216.47ENCSR000AEF
HepG2CCDC134ENSG00000100147.137.458.858.15ENCSR985KAT
K562CCDC134ENSG00000100147.133.063.543.30ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC134 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC134 RNA is bound by 8 proteins.  







eCLIP assay for CCDC134 is not avaliable on ENCORE database.





8 proteins are bound to CCDC134 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr224222215642222259+3'-UTR4.744626.20043HepG2UPF1
chr224222205742222117+3'-UTR4.600464.90799K562UPF1
chr224222216442222255+3'-UTR4.860404.46422K562UPF1
chr224222204742222147+3'-UTR3.334033.20150HepG2AKAP1
chr224219669242196770+5'-UTR4.826434.54356K562DDX3X
chr224220621042206264+CDS,intron-Distal,intron-Proximal3.476164.08796K562SND1
chr224220621042206245+CDS,intron-Distal,intron-Proximal4.729435.86613HepG2PPIG
chr224220589742205957+CDS4.111823.31827HepG2GRWD1
chr224220975442209778+CDS,intron-Distal,intron-Proximal4.233903.48040HepG2SND1
chr224220926742209333+CDS,intron-Distal,intron-Proximal5.028185.24633HepG2SND1
chr224220621042206283+CDS,intron-Distal,intron-Proximal3.188723.40279K562NOLC1
chr224220490142204985+CDS5.226648.17820K562NOLC1
chr224220621642206291+CDS,intron-Distal4.362705.51172HepG2SND1
chr224222171842221807+CDS3.017853.50686HepG2PPIG
chr224219945642199518+intron-Distal3.767753.29026K562KHDRBS1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC134 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC134 is not available on ENCORE database.

  • 19 RBPs can affect the levels of CCDC134.  








The Knockdown/knockout RNA-Seq assay for CCDC134 is not available on ENCORE database.





19 RBPs can affect the gene expression of CCDC134 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC134ENSG00000100147.9114.87720169.69880-0.562902.166201.54510HepG2AUH
CCDC134ENSG00000100147.9184.3960096.596500.932704.181803.40040HepG2EIF4A3
CCDC134ENSG00000100147.9115.95130194.85320-0.748903.505802.84140HepG2ETF1
CCDC134ENSG00000100147.9234.2501097.430401.265507.995906.89310HepG2MAGOH
CCDC134ENSG00000100147.9157.8706097.986300.688002.221901.65320HepG2MATR3
CCDC134ENSG00000100147.9155.1010089.034700.800703.487002.82340HepG2PCBP1
CCDC134ENSG00000100147.993.79800142.20380-0.600302.236801.45510HepG2RBM15
CCDC134ENSG00000100147.999.66170162.85780-0.708502.846902.32290HepG2RBM22
CCDC134ENSG00000100147.989.39150183.93590-1.041006.293405.62170HepG2SRFBP1
CCDC134ENSG00000100147.9152.9718098.452600.635702.074001.64820HepG2SRSF1
CCDC134ENSG00000100147.9268.28250159.689400.748405.098404.44380HepG2SSB
CCDC134ENSG00000100147.966.72660116.23560-0.800702.456101.76760HepG2TARDBP
CCDC134ENSG00000100147.9140.5133076.554100.876102.400301.40670HepG2TBRG4
CCDC134ENSG00000100147.9231.33390149.343800.631202.015101.48730HepG2UTP3
CCDC134ENSG00000100147.985.79560170.12510-0.987603.596402.99460HepG2ZNF622
CCDC134ENSG00000100147.954.5096094.30070-0.790802.307101.78070K562AGGF1
CCDC134ENSG00000100147.912.2089043.42120-1.830503.689902.84760K562G3BP2
CCDC134ENSG00000100147.996.9999056.288600.785002.220401.61510K562PTBP1
CCDC134ENSG00000100147.950.3106097.34160-0.952202.635102.10150K562PUS1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC134 is not available on ENCORE database.





1 RBPs can affect the splicing of CCDC134 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCDC134ENSG00000100147.9chr22+4219700242197080421966824219677042204878422049970.409000.003970.06193includedK562SF3B4

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCDC134 is not avaliable on ENCORE database.