C3orf35

General Information

Gene Name : C3orf35
Gene ID : ENSG00000198590.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: C3orf35)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	C3orf35	ENSG00000198590.11	0.44	0.22	0.33	ENCSR000AEF
HepG2	C3orf35	ENSG00000198590.11	0.72	0.88	0.80	ENCSR985KAT
K562	C3orf35	ENSG00000198590.11	0.61	0.75	0.68	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for C3orf35 is not avaliable on ENCORE database.

Proteins bound to RNA

C3orf35 RNA is bound by 12 proteins.

eCLIP assay for C3orf35 is not avaliable on ENCORE database.

12 proteins are bound to C3orf35 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	37459734	37459854	+	3'-UTR,intron-Distal	4.22724	4.26925	HepG2	KHSRP
chr3	37452611	37452675	+	3'-UTR,5'-UTR,intron-Proximal	3.24566	3.76090	HepG2	U2AF2
chr3	37458040	37458105	+	3'-UTR,5'-UTR,intron-Proximal	4.85982	6.13315	HepG2	BCLAF1
chr3	37459302	37459412	+	3'-UTR,intron-Distal,intron-Proximal	3.56464	9.41040	HepG2	HNRNPL
chr3	37458497	37458566	+	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.19238	4.57751	HepG2	U2AF2
chr3	37458182	37458223	+	3'-UTR,5'-UTR,intron-Proximal	3.85982	5.36555	HepG2	BCLAF1
chr3	37458135	37458245	+	3'-UTR,5'-UTR,intron-Proximal	3.29478	3.73423	K562	UCHL5
chr3	37470163	37470247	+	intron-Distal	4.29780	3.96879	HepG2	MATR3
chr3	37442271	37442314	+	intron-Distal	4.54218	5.11328	HepG2	SUGP2
chr3	37443413	37443437	+	intron-Distal	3.09159	3.46325	HepG2	SUGP2
chr3	37430746	37430799	+	intron-Distal	4.61477	5.44433	K562	EXOSC5
chr3	37464137	37464203	+	intron-Distal	3.14735	4.61989	HepG2	SUGP2
chr3	37443658	37443738	+	intron-Distal	4.42039	4.91164	HepG2	HNRNPL
chr3	37451288	37451331	+	intron-Distal	4.10224	3.62238	HepG2	MATR3
chr3	37470945	37471044	+	intron-Distal	3.63321	3.39827	HepG2	MATR3
chr3	37438488	37438606	+	intron-Distal	3.55507	5.67528	K562	HNRNPL
chr3	37442545	37442608	+	intron-Distal	3.06841	6.36326	HepG2	SUGP2
chr3	37463812	37463900	+	intron-Distal	4.07354	7.47563	HepG2	SUGP2
chr3	37440137	37440174	+	intron-Distal	3.11818	3.35050	HepG2	SUGP2
chr3	37439864	37439905	+	intron-Distal	3.18505	3.69184	HepG2	SUGP2
chr3	37448577	37448688	+	intron-Distal	3.43228	3.11000	HepG2	HNRNPM
chr3	37470959	37471069	+	intron-Distal	4.53527	4.78128	HepG2	SUGP2
chr3	37464203	37464262	+	intron-Distal	4.43276	5.59955	HepG2	SUGP2
chr3	37463763	37463812	+	intron-Distal	4.38121	5.11328	HepG2	SUGP2
chr3	37443592	37443658	+	intron-Distal	3.35763	6.14017	HepG2	HNRNPL
chr3	37431862	37431887	+	intron-Distal	3.84605	3.01445	K562	EXOSC5
chr3	37442638	37442686	+	intron-Distal	3.03527	6.13708	HepG2	SUGP2
chr3	37432108	37432172	+	intron-Distal	4.66477	4.48623	K562	EXOSC5
chr3	37439986	37440036	+	intron-Distal	3.17750	3.10883	HepG2	SUGP2
chr3	37449588	37449687	+	intron-Distal	4.13133	8.08030	HepG2	QKI
chr3	37431735	37431786	+	intron-Distal	3.92655	5.80937	K562	EXOSC5
chr3	37431938	37432001	+	intron-Distal	3.15305	3.10883	HepG2	SUGP2
chr3	37437290	37437451	+	intron-Distal	4.84468	5.84425	HepG2	CSTF2
chr3	37431243	37431291	+	intron-Distal	3.53325	5.29801	K562	EXOSC5
chr3	37431600	37431659	+	intron-Distal	3.80747	5.20902	K562	EXOSC5
chr3	37437301	37437390	+	intron-Distal	3.98983	3.80314	K562	CSTF2T
chr3	37458378	37458489	+	intron-Distal,intron-Proximal	3.77804	3.45805	K562	KHSRP
chr3	37443927	37443962	+	intron-Distal	3.27002	4.08528	HepG2	SUGP2
chr3	37442878	37442926	+	intron-Distal	3.41961	6.05394	HepG2	SUGP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for C3orf35 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for C3orf35 is not available on ENCORE database.
19 RBPs can affect the levels of C3orf35.

The Knockdown/knockout RNA-Seq assay for C3orf35 is not available on ENCORE database.

19 RBPs can affect the gene expression of C3orf35 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
C3orf35	ENSG00000198590.7	9.43210	42.25540	-2.16350	3.85460	3.24200	HepG2	AKAP1
C3orf35	ENSG00000198590.7	11.96990	34.96250	-1.54640	2.35640	1.62780	HepG2	ASCC1
C3orf35	ENSG00000198590.7	35.75980	102.39490	-1.51770	5.24160	4.18400	HepG2	CNOT7
C3orf35	ENSG00000198590.7	57.83630	26.84980	1.10700	2.29800	1.57680	HepG2	FUBP3
C3orf35	ENSG00000198590.7	132.80880	35.01190	1.92330	9.36540	8.14110	HepG2	HNRNPK
C3orf35	ENSG00000198590.7	11.18860	28.61180	-1.35460	1.91980	1.40600	HepG2	HNRNPU
C3orf35	ENSG00000198590.7	179.75360	93.61020	0.94120	3.53520	2.52330	HepG2	PABPC1
C3orf35	ENSG00000198590.7	21.95530	63.84020	-1.53990	4.68540	3.95600	HepG2	PUM1
C3orf35	ENSG00000198590.7	21.44550	45.98970	-1.10060	1.83450	1.37420	HepG2	NELFE
C3orf35	ENSG00000198590.7	46.60650	102.88510	-1.14240	3.76800	2.83420	HepG2	RPS3A
C3orf35	ENSG00000198590.7	75.59950	29.00140	1.38220	4.03960	3.46780	HepG2	SRFBP1
C3orf35	ENSG00000198590.7	8.98120	44.90560	-2.32190	4.80480	4.22540	HepG2	SRSF1
C3orf35	ENSG00000198590.7	201.01390	89.52100	1.16690	6.60740	4.84520	HepG2	STIP1
C3orf35	ENSG00000198590.7	26.25500	67.53030	-1.36290	3.87340	3.15990	HepG2	SUCLG1
C3orf35	ENSG00000198590.7	52.25030	23.03570	1.18150	2.21130	1.36780	HepG2	SUPT6H
C3orf35	ENSG00000198590.7	107.99230	40.37420	1.41930	6.13680	5.35730	HepG2	TAF15
C3orf35	ENSG00000198590.7	80.55450	37.08640	1.11900	3.67020	2.71310	HepG2	TIA1
C3orf35	ENSG00000198590.7	20.42920	45.97930	-1.17040	2.29720	1.69450	K562	DDX47
C3orf35	ENSG00000198590.7	41.36010	14.31640	1.53050	2.77850	1.54050	K562	HNRNPK
C3orf35	ENSG00000198590.7	72.78170	28.85900	1.33450	3.22600	1.50640	K562	RPS3A
C3orf35	ENSG00000198590.7	82.63080	27.63050	1.58030	3.69740	1.94890	K562	SUPT6H
C3orf35	ENSG00000198590.7	63.74030	22.90520	1.47640	4.32570	3.32640	K562	U2AF2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for C3orf35 is not available on ENCORE database.

1 RBPs can affect the splicing of C3orf35 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
RI	C3orf35	ENSG00000198590.7	chr3	+	37458509	37459592			37458509	37458633	37458743	37459592	-0.80900	0.00005	0.03992	excluded	HepG2	RBM5

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

C3orf35

General Information

Functions

Localization

Domains (AlphaFold: C3orf35)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for C3orf35 is not avaliable on ENCORE database.

12 proteins are bound to C3orf35 RNA:

eCLIP assay for C3orf35 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for C3orf35 is not available on ENCORE database.

19 RBPs can affect the gene expression of C3orf35 :

The Knockdown/knockout RNA-Seq assay for C3orf35 is not available on ENCORE database.

1 RBPs can affect the splicing of C3orf35 :

The Knockdown/knockout RNA-Seq assay for C3orf35 is not avaliable on ENCORE database.