VAMP2

General Information

Gene Name : VAMP2
Gene ID : ENSG00000220205.8
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: VAMP2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	VAMP2	ENSG00000220205.8	25.74	23.97	24.85	ENCSR000AEF
HepG2	VAMP2	ENSG00000220205.8	12.76	14.97	13.87	ENCSR985KAT
K562	VAMP2	ENSG00000220205.8	20.29	21.39	20.84	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for VAMP2 is not avaliable on ENCORE database.

Proteins bound to RNA

VAMP2 RNA is bound by 24 proteins.

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eCLIP assay for VAMP2 is not avaliable on ENCORE database.

24 proteins are bound to VAMP2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	8063851	8063933	-	3'-UTR,intron-Distal	5.03389	42.57787	HepG2	PCBP2
chr17	8063828	8063948	-	3'-UTR,intron-Distal	4.35278	36.89201	K562	PCBP1
chr17	8063729	8063803	-	3'-UTR,intron-Distal	6.47205	34.67995	HepG2	PCBP2
chr17	8064010	8064075	-	3'-UTR,intron-Distal,intron-Proximal	4.34157	23.89204	K562	PUM2
chr17	8063608	8063691	-	3'-UTR,intron-Distal,intron-Proximal	5.93283	21.87517	K562	PABPC4
chr17	8063830	8063902	-	3'-UTR,intron-Distal	3.97410	16.06320	K562	ILF3
chr17	8064948	8065062	-	CDS,intron-Distal	3.24518	14.57201	K562	ZNF622
chr17	8063290	8063335	-	3'-UTR,intron-Distal	4.64542	14.32541	HepG2	PCBP2
chr17	8063720	8063830	-	3'-UTR,intron-Distal,intron-Proximal	4.27170	13.09338	K562	ILF3
chr17	8063839	8063928	-	3'-UTR,intron-Distal	3.88556	12.66324	HepG2	HNRNPK
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 58 entries

eCLIP assay for VAMP2 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for VAMP2 is not available on ENCORE database.
119 RBPs can affect the levels of VAMP2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for VAMP2 is not available on ENCORE database.

119 RBPs can affect the gene expression of VAMP2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
VAMP2	ENSG00000220205.4	4195.19360	2273.15190	0.88390	28.65930	26.67140	K562	RBM15
VAMP2	ENSG00000220205.4	1803.39360	1061.48360	0.76450	25.82810	23.91140	K562	NSUN2
VAMP2	ENSG00000220205.4	1272.77350	690.25940	0.88270	23.39800	21.78870	HepG2	ZC3H8
VAMP2	ENSG00000220205.4	5890.43650	2332.90330	1.33610	20.72990	19.27500	K562	PUS1
VAMP2	ENSG00000220205.4	3508.54100	2260.79630	0.63390	19.62070	18.22740	K562	AGGF1
VAMP2	ENSG00000220205.4	255.51220	730.88080	-1.51620	18.93230	17.67030	HepG2	AKAP1
VAMP2	ENSG00000220205.4	1511.98710	774.83660	0.96440	18.12340	16.68080	K562	HNRNPC
VAMP2	ENSG00000220205.4	1226.15820	653.15320	0.90860	17.10680	15.74460	HepG2	QKI
VAMP2	ENSG00000220205.4	948.17340	511.41200	0.89060	16.79670	15.33600	HepG2	SRSF7
VAMP2	ENSG00000220205.4	1481.20490	756.55180	0.96920	17.55250	14.18970	K562	PHF6
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 151 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

VAMP2

General Information

Functions

Localization

Domains (AlphaFold: VAMP2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for VAMP2 is not avaliable on ENCORE database.

24 proteins are bound to VAMP2 RNA:

eCLIP assay for VAMP2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for VAMP2 is not available on ENCORE database.

119 RBPs can affect the gene expression of VAMP2 :

The Knockdown/knockout RNA-Seq assay for VAMP2 is not available on ENCORE database.

No RBPs affect the alternative splcing events of VAMP2 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for VAMP2 is not avaliable on ENCORE database.