UBTF

General Information

Gene Name : UBTF
Gene ID : ENSG00000108312.14
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: UBTF)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	UBTF	ENSG00000108312.14	49.51	74.93	62.22	ENCSR000AEF
HepG2	UBTF	ENSG00000108312.14	65.80	51.75	58.77	ENCSR985KAT
K562	UBTF	ENSG00000108312.14	69.71	74.31	72.01	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for UBTF is not avaliable on ENCORE database.

Proteins bound to RNA

UBTF RNA is bound by 37 proteins.

CanvasJS.com

eCLIP assay for UBTF is not avaliable on ENCORE database.

37 proteins are bound to UBTF RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	42283710	42283803	-	3'-UTR,intron-Distal	6.37073	68.68861	K562	TARDBP
chr17	42284411	42284474	-	3'-UTR,intron-Distal,intron-Proximal	5.28018	51.88506	K562	PABPC4
chr17	42283803	42283881	-	3'-UTR,intron-Distal,intron-Proximal	5.25080	36.32739	K562	TARDBP
chr17	42283959	42284000	-	3'-UTR,intron-Distal,intron-Proximal,polyA_site	7.48177	31.89367	K562	PUM2
chr17	42283736	42283864	-	3'-UTR,intron-Distal,intron-Proximal	5.27765	30.13216	K562	EIF4G2
chr17	42284572	42284692	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.89382	27.22501	K562	PUM1
chr17	42283731	42283805	-	3'-UTR,intron-Distal	4.73357	24.65892	K562	UPF1
chr17	42284637	42284736	-	CDS,intron-Distal,intron-Proximal	3.79724	21.05593	K562	ZNF800
chr17	42288928	42288957	-	intron-Distal,intron-Proximal	6.78007	20.63385	K562	AQR
chr17	42284824	42284948	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.49788	20.28602	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 163 entries

eCLIP assay for UBTF is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for UBTF is not available on ENCORE database.
95 RBPs can affect the levels of UBTF.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for UBTF is not available on ENCORE database.

95 RBPs can affect the gene expression of UBTF :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
UBTF	ENSG00000108312.10	3190.56580	1646.96350	0.95390	33.56120	31.58680	K562	FXR1
UBTF	ENSG00000108312.10	2325.30090	1430.58500	0.70070	19.99790	18.97230	HepG2	SRSF1
UBTF	ENSG00000108312.10	2511.19630	1462.13070	0.78020	19.59760	17.41690	K562	EIF3G
UBTF	ENSG00000108312.10	6210.34600	4314.66780	0.52530	15.26180	13.84680	K562	DDX47
UBTF	ENSG00000108312.10	2686.69510	1933.37770	0.47460	13.96860	12.85040	HepG2	PUM1
UBTF	ENSG00000108312.10	2369.93990	1619.20320	0.54950	13.08270	11.92240	HepG2	UTP3
UBTF	ENSG00000108312.10	1388.30850	2400.53290	-0.79000	12.08710	10.99870	K562	PUS1
UBTF	ENSG00000108312.10	4843.51020	3177.29700	0.60820	12.70450	10.95160	K562	SYNCRIP
UBTF	ENSG00000108312.10	1583.90970	2300.69470	-0.53860	11.88630	10.63740	HepG2	AUH
UBTF	ENSG00000108312.10	1826.99780	1305.61860	0.48460	11.48490	10.31510	HepG2	SMN1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 110 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for UBTF is not available on ENCORE database.

16 RBPs can affect the splicing of UBTF :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	UBTF	ENSG00000108312.10	chr17	-	42289711	42289822	42289240	42289374	42290186	42290307	-0.20800	0.00000	0.00000	excluded	K562	SRSF1
SE	UBTF	ENSG00000108312.10	chr17	-	42289711	42289822	42289240	42289374	42290186	42290307	-0.16700	0.00000	0.00002	excluded	HepG2	U2AF1
SE	UBTF	ENSG00000108312.10	chr17	-	42290585	42290650	42290186	42290307	42293021	42293177	-0.05100	0.00000	0.00000	excluded	HepG2	U2AF2
SE	UBTF	ENSG00000108312.10	chr17	-	42288657	42288699	42288406	42288520	42288973	42289115	-0.35200	0.00000	0.00000	excluded	HepG2	U2AF2
SE	UBTF	ENSG00000108312.10	chr17	-	42285986	42286369	42285231	42285279	42286719	42286790	0.06600	0.00000	0.00094	included	HepG2	HNRNPL
SE	UBTF	ENSG00000108312.10	chr17	-	42289711	42289822	42289240	42289374	42290186	42290307	0.27500	0.00000	0.00008	included	K562	TARDBP
SE	UBTF	ENSG00000108312.10	chr17	-	42289711	42289822	42289240	42289374	42290186	42290307	0.22700	0.00000	0.00001	included	K562	HNRNPU
SE	UBTF	ENSG00000108312.10	chr17	-	42288159	42288315	42287685	42287841	42288406	42288520	-0.24900	0.00001	0.00021	excluded	HepG2	U2AF1
RI	UBTF	ENSG00000108312.10	chr17	-	42285070	42285319	42285070	42285138	42285231	42285319	0.05200	0.00001	0.00007	included	K562	AQR
SE	UBTF	ENSG00000108312.10	chr17	-	42288657	42288699	42288406	42288520	42288973	42289115	-0.12200	0.00005	0.00143	excluded	HepG2	U2AF1

Showing 1 to 10 of 25 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

UBTF

General Information

Functions

Localization

Domains (AlphaFold: UBTF)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for UBTF is not avaliable on ENCORE database.

37 proteins are bound to UBTF RNA:

eCLIP assay for UBTF is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for UBTF is not available on ENCORE database.

95 RBPs can affect the gene expression of UBTF :

The Knockdown/knockout RNA-Seq assay for UBTF is not available on ENCORE database.

16 RBPs can affect the splicing of UBTF :

The Knockdown/knockout RNA-Seq assay for UBTF is not avaliable on ENCORE database.