TRMU

General Information

Gene Name : TRMU
Gene ID : ENSG00000100416.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TRMU)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TRMU	ENSG00000100416.13	16.26	23.69	19.98	ENCSR000AEF
HepG2	TRMU	ENSG00000100416.13	42.50	41.46	41.98	ENCSR985KAT
K562	TRMU	ENSG00000100416.13	26.20	22.39	24.30	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	TRMU-BGRSLV05-RS293		TRMU	Ribo-STAMP-293T	Released			shRNA	KD% = ,

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
TRMU	Ribo-STAMP-293T	shRNA			TRMU-BGRSLV05-27,TRMU-BGRSLV05-28	NT-BGRSLV05-1,NT-BGRSLV05-2	,	Released	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TRMU is not avaliable on ENCORE database.

Proteins bound to RNA

TRMU RNA is bound by 23 proteins.

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eCLIP assay for TRMU is not avaliable on ENCORE database.

23 proteins are bound to TRMU RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	46751545	46751589	+	intron-Distal,intron-Proximal	5.23440	22.27776	HepG2	RBM22
chr22	46752286	46752437	+	intron-Distal	4.69332	20.96487	HepG2	PRPF4
chr22	46749742	46749820	+	3'-UTR,CDS,intron-Proximal	4.16103	19.76015	HepG2	PRPF8
chr22	46752684	46752742	+	3'-UTR,CDS,intron-Proximal	5.34136	16.06702	K562	SF3B4
chr22	46751483	46751569	+	3'-UTR,CDS,intron-Proximal	3.86856	14.67295	K562	AQR
chr22	46733827	46733889	+	CDS,intron-Proximal	5.50371	14.46261	HepG2	PRPF8
chr22	46752848	46753002	+	3'-UTR,CDS	4.36326	13.26490	HepG2	PPIG
chr22	46751467	46751541	+	3'-UTR,CDS,intron-Proximal	3.49778	11.67840	HepG2	PRPF8
chr22	46751542	46751613	+	intron-Distal,intron-Proximal	3.93634	10.97171	HepG2	BUD13
chr22	46752681	46752746	+	3'-UTR,CDS,intron-Proximal	4.43432	10.37483	HepG2	SF3A3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 73 entries

eCLIP assay for TRMU is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TRMU is not available on ENCORE database.
80 RBPs can affect the levels of TRMU.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TRMU is not available on ENCORE database.

80 RBPs can affect the gene expression of TRMU :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TRMU	ENSG00000100416.8	910.42390	578.13040	0.65500	9.69350	8.68650	HepG2	SF3B4
TRMU	ENSG00000100416.8	816.86560	473.67810	0.78610	9.91780	8.59440	K562	SRSF1
TRMU	ENSG00000100416.8	947.54790	535.19940	0.82400	9.38880	7.61040	K562	EFTUD2
TRMU	ENSG00000100416.8	330.26570	576.10880	-0.80270	8.63760	7.38350	HepG2	CALR
TRMU	ENSG00000100416.8	243.72630	475.73950	-0.96490	8.34740	7.31850	HepG2	HNRNPLL
TRMU	ENSG00000100416.8	521.71810	300.96890	0.79360	8.71090	7.14730	K562	SF3B4
TRMU	ENSG00000100416.8	1907.19560	1248.93920	0.61060	7.54360	6.65240	K562	AQR
TRMU	ENSG00000100416.8	525.04990	756.25440	-0.52640	7.15570	6.38220	HepG2	ZNF622
TRMU	ENSG00000100416.8	740.21190	442.40900	0.74250	7.92100	6.23620	K562	PCBP2
TRMU	ENSG00000100416.8	497.44070	781.37770	-0.65150	7.49970	6.18200	HepG2	RBM15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 92 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TRMU is not available on ENCORE database.

27 RBPs can affect the splicing of TRMU :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TRMU	ENSG00000100416.8	chr22	+	46739158	46739265			46733675	46733841	46742318	46742441	-0.45200	0.00000	0.00000	excluded	K562	IGF2BP2
SE	TRMU	ENSG00000100416.8	chr22	+	46739158	46739265			46733675	46733841	46742318	46742441	-0.29800	0.00000	0.00003	excluded	K562	SF3B4
SE	TRMU	ENSG00000100416.8	chr22	+	46739158	46739265			46733675	46733841	46742318	46742441	-0.46900	0.00000	0.00000	excluded	HepG2	U2AF1
SE	TRMU	ENSG00000100416.8	chr22	+	46739158	46739265			46733675	46733841	46742318	46742441	-0.31800	0.00000	0.00334	excluded	K562	BUD13
SE	TRMU	ENSG00000100416.8	chr22	+	46739158	46739265			46733675	46733841	46742318	46742441	-0.41500	0.00000	0.00000	excluded	K562	U2AF1
SE	TRMU	ENSG00000100416.8	chr22	+	46739158	46739265			46733675	46733841	46742318	46742441	0.31700	0.00000	0.00014	included	HepG2	HNRNPC
A3SS	TRMU	ENSG00000100416.8	chr22	+	46746187	46746360			46746242	46746360	46742318	46742441	0.41500	0.00000	0.00044	longer	K562	FXR1
A3SS	TRMU	ENSG00000100416.8	chr22	+	46746187	46746360			46746242	46746360	46742318	46742441	0.51300	0.00000	0.00000	longer	K562	SRSF1
MXE	TRMU	ENSG00000100416.8	chr22	+	46742318	46742441	46746242	46746360	46733675	46733841	46748017	46748071	0.42300	0.00000	0.00000	1included	K562	PUS1
SE	TRMU	ENSG00000100416.8	chr22	+	46739158	46739265			46733675	46733841	46742318	46742441	0.33800	0.00001	0.00081	included	K562	FXR1

Showing 1 to 10 of 48 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TRMU

General Information

Functions

Localization

Domains (AlphaFold: TRMU)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TRMU is not avaliable on ENCORE database.

23 proteins are bound to TRMU RNA:

eCLIP assay for TRMU is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TRMU is not available on ENCORE database.

80 RBPs can affect the gene expression of TRMU :

The Knockdown/knockout RNA-Seq assay for TRMU is not available on ENCORE database.

27 RBPs can affect the splicing of TRMU :

The Knockdown/knockout RNA-Seq assay for TRMU is not avaliable on ENCORE database.