TRMT112

General Information

Gene Name : TRMT112
Gene ID : ENSG00000173113.6
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TRMT112)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TRMT112	ENSG00000173113.6	60.74	149.75	105.25	ENCSR000AEF
HepG2	TRMT112	ENSG00000173113.6	171.39	167.56	169.47	ENCSR985KAT
K562	TRMT112	ENSG00000173113.6	192.34	199.91	196.12	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TRMT112 is not avaliable on ENCORE database.

Proteins bound to RNA

TRMT112 RNA is bound by 17 proteins.

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eCLIP assay for TRMT112 is not avaliable on ENCORE database.

17 proteins are bound to TRMT112 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	64084219	64084294	-	3'-UTR,intron-Distal	7.06028	400.00000	HepG2	SUB1
chr11	64084294	64084334	-	3'-UTR,intron-Distal	6.74065	53.23447	HepG2	SUB1
chr11	64084265	64084294	-	3'-UTR,intron-Distal	3.42894	30.80137	HepG2	LARP4
chr11	64084230	64084294	-	3'-UTR,intron-Distal	4.15133	27.55031	K562	NOLC1
chr11	64084210	64084265	-	3'-UTR,intron-Distal	3.57399	26.69205	HepG2	LARP4
chr11	64084559	64084619	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.79436	25.39190	K562	RPS3
chr11	64084920	64085028	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.17749	24.89640	K562	DDX3X
chr11	64084919	64084980	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.29303	24.53744	K562	RPS3
chr11	64084915	64084974	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.76773	23.28663	HepG2	DDX3X
chr11	64084735	64084793	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.18709	16.17979	K562	LIN28B
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 47 entries

eCLIP assay for TRMT112 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TRMT112 is not available on ENCORE database.
89 RBPs can affect the levels of TRMT112.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TRMT112 is not available on ENCORE database.

89 RBPs can affect the gene expression of TRMT112 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TRMT112	ENSG00000173113.2	2422.11370	1266.62710	0.93520	33.15170	31.27350	K562	AGGF1
TRMT112	ENSG00000173113.2	618.71570	1512.70520	-1.28980	30.50850	28.60460	K562	HNRNPC
TRMT112	ENSG00000173113.2	958.99940	1823.31010	-0.92700	28.39860	26.79920	HepG2	PCBP1
TRMT112	ENSG00000173113.2	1154.26500	2064.75510	-0.83900	23.85800	22.58130	HepG2	NELFE
TRMT112	ENSG00000173113.2	1045.46160	1855.28540	-0.82750	22.38360	21.11300	HepG2	PTBP1
TRMT112	ENSG00000173113.2	4647.36530	2358.04670	0.97870	22.40660	20.91850	K562	AQR
TRMT112	ENSG00000173113.2	2508.62140	1317.98890	0.92850	18.89470	16.88400	K562	AKAP8L
TRMT112	ENSG00000173113.2	3362.27830	1307.04060	1.36300	18.04400	16.69200	K562	PUS1
TRMT112	ENSG00000173113.2	456.81370	855.46170	-0.90510	17.77230	16.30380	HepG2	UPF1
TRMT112	ENSG00000173113.2	1194.27840	1931.59300	-0.69370	16.93530	15.66250	HepG2	SF3B4
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 102 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TRMT112 is not available on ENCORE database.

9 RBPs can affect the splicing of TRMT112 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	is_included	Cell Line	Affected by RBP
RI	TRMT112	ENSG00000173113.2	chr11	-	64084162	64084619	64084162	64084440	64084529	64084619	0.05500	included	HepG2	SF3A3
RI	TRMT112	ENSG00000173113.2	chr11	-	64084162	64084619	64084162	64084440	64084529	64084619	0.05700	included	HepG2	U2AF2
RI	TRMT112	ENSG00000173113.2	chr11	-	64084162	64084619	64084162	64084440	64084529	64084619	0.07400	included	HepG2	PRPF8
RI	TRMT112	ENSG00000173113.2	chr11	-	64084162	64084619	64084162	64084440	64084529	64084619	0.08000	included	K562	PRPF8
RI	TRMT112	ENSG00000173113.2	chr11	-	64084162	64084619	64084162	64084440	64084529	64084619	0.07300	included	HepG2	PCBP1
RI	TRMT112	ENSG00000173113.2	chr11	-	64084162	64084619	64084162	64084440	64084529	64084619	0.06200	included	HepG2	TIAL1
RI	TRMT112	ENSG00000173113.2	chr11	-	64084162	64084619	64084162	64084440	64084529	64084619	0.05600	included	HepG2	SF3B4
RI	TRMT112	ENSG00000173113.2	chr11	-	64084162	64084619	64084162	64084440	64084529	64084619	0.07200	included	K562	EFTUD2
RI	TRMT112	ENSG00000173113.2	chr11	-	64084162	64084619	64084162	64084440	64084529	64084619	0.19000	included	K562	AQR
RI	TRMT112	ENSG00000173113.2	chr11	-	64084529	64084770	64084529	64084619	64084735	64084770	0.09300	included	K562	AQR

Showing 1 to 10 of 11 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TRMT112

General Information

Functions

Localization

Domains (AlphaFold: TRMT112)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TRMT112 is not avaliable on ENCORE database.

17 proteins are bound to TRMT112 RNA:

eCLIP assay for TRMT112 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TRMT112 is not available on ENCORE database.

89 RBPs can affect the gene expression of TRMT112 :

The Knockdown/knockout RNA-Seq assay for TRMT112 is not available on ENCORE database.

9 RBPs can affect the splicing of TRMT112 :

The Knockdown/knockout RNA-Seq assay for TRMT112 is not avaliable on ENCORE database.