TM9SF2

General Information

Gene Name : TM9SF2
Gene ID : ENSG00000125304.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TM9SF2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TM9SF2	ENSG00000125304.9	60.32	55.24	57.78	ENCSR000AEF
HepG2	TM9SF2	ENSG00000125304.9	44.44	83.62	64.03	ENCSR985KAT
K562	TM9SF2	ENSG00000125304.9	40.73	41.20	40.97	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TM9SF2 is not avaliable on ENCORE database.

Proteins bound to RNA

TM9SF2 RNA is bound by 31 proteins.

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eCLIP assay for TM9SF2 is not avaliable on ENCORE database.

31 proteins are bound to TM9SF2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr13	100153942	100153998	+	CDS	4.41801	46.48686	HepG2	DDX3X
chr13	100153762	100153844	+	5'-UTR	4.14866	42.74941	HepG2	DDX3X
chr13	100153864	100153942	+	CDS	4.06279	42.69334	HepG2	DDX3X
chr13	100199290	100199349	+	CDS	4.14520	40.51285	HepG2	SND1
chr13	100153918	100154005	+	CDS	4.64988	28.76163	HepG2	RPS3
chr13	100215363	100215387	+	3'-UTR	5.49421	27.73162	K562	PUM2
chr13	100199255	100199290	+	CDS	3.47821	25.83493	HepG2	SND1
chr13	100215387	100215414	+	3'-UTR	5.82705	23.47213	K562	PUM2
chr13	100215368	100215426	+	3'-UTR	4.56662	19.45589	K562	PABPC4
chr13	100153854	100153918	+	5'-UTR,CDS	4.16865	19.33496	HepG2	RPS3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 90 entries

eCLIP assay for TM9SF2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TM9SF2 is not available on ENCORE database.
84 RBPs can affect the levels of TM9SF2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TM9SF2 is not available on ENCORE database.

84 RBPs can affect the gene expression of TM9SF2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TM9SF2	ENSG00000125304.8	6383.84420	4309.75750	0.56670	26.89960	25.64130	HepG2	ZNF622
TM9SF2	ENSG00000125304.8	3014.91880	4779.79470	-0.66480	20.78640	19.35750	HepG2	CELF1
TM9SF2	ENSG00000125304.8	4576.89900	2577.08080	0.82850	14.36270	13.08310	HepG2	HNRNPLL
TM9SF2	ENSG00000125304.8	4214.56720	5909.06860	-0.48750	13.76800	12.73260	HepG2	NELFE
TM9SF2	ENSG00000125304.8	3784.92200	2740.55930	0.46570	13.87580	12.56330	HepG2	ZC3H8
TM9SF2	ENSG00000125304.8	4198.81780	2511.79550	0.74120	12.90090	11.51370	HepG2	TARDBP
TM9SF2	ENSG00000125304.8	2829.31600	3945.74730	-0.47980	12.34870	11.14410	HepG2	HNRNPU
TM9SF2	ENSG00000125304.8	3174.68860	4726.80640	-0.57430	11.05780	9.18140	K562	CELF1
TM9SF2	ENSG00000125304.8	4182.12950	5528.04250	-0.40250	9.87170	8.85610	HepG2	SF3B4
TM9SF2	ENSG00000125304.8	3764.37790	2382.20990	0.66000	9.86050	8.64140	HepG2	CPSF6
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 99 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TM9SF2 is not available on ENCORE database.

13 RBPs can affect the splicing of TM9SF2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TM9SF2	ENSG00000125304.8	chr13	+	100191699	100191811			100189992	100190117	100192967	100193047	-0.14200	0.00000	0.00000	excluded	K562	SF3B4
SE	TM9SF2	ENSG00000125304.8	chr13	+	100191699	100191811			100189979	100190117	100192967	100193047	-0.07400	0.00000	0.00000	excluded	K562	AQR
SE	TM9SF2	ENSG00000125304.8	chr13	+	100191699	100191811			100189992	100190117	100192967	100193047	-0.07300	0.00000	0.00011	excluded	K562	PUS1
SE	TM9SF2	ENSG00000125304.8	chr13	+	100191699	100191811			100189992	100190117	100192967	100193047	-0.08700	0.00000	0.00020	excluded	K562	HNRNPUL1
SE	TM9SF2	ENSG00000125304.8	chr13	+	100189992	100190117			100188861	100188991	100192967	100193047	-0.24600	0.00000	0.00000	excluded	K562	UTP18
SE	TM9SF2	ENSG00000125304.8	chr13	+	100189992	100190117			100188861	100188991	100192967	100193047	-0.17500	0.00000	0.00002	excluded	K562	TARDBP
SE	TM9SF2	ENSG00000125304.8	chr13	+	100191699	100191811			100189992	100190117	100192967	100193047	-0.07800	0.00000	0.00011	excluded	K562	RBM15
MXE	TM9SF2	ENSG00000125304.8	chr13	+	100188861	100188991	100191699	100191811	100172289	100172383	100192967	100193047	0.11600	0.00000	0.00000	1included	K562	AQR
SE	TM9SF2	ENSG00000125304.8	chr13	+	100191699	100191811			100189992	100190117	100192967	100193047	-0.07600	0.00001	0.00087	excluded	K562	AGGF1
SE	TM9SF2	ENSG00000125304.8	chr13	+	100191699	100191811			100189992	100190117	100192967	100193047	-0.08100	0.00006	0.00166	excluded	K562	HNRNPC

Showing 1 to 10 of 16 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TM9SF2

General Information

Functions

Localization

Domains (AlphaFold: TM9SF2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TM9SF2 is not avaliable on ENCORE database.

31 proteins are bound to TM9SF2 RNA:

eCLIP assay for TM9SF2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TM9SF2 is not available on ENCORE database.

84 RBPs can affect the gene expression of TM9SF2 :

The Knockdown/knockout RNA-Seq assay for TM9SF2 is not available on ENCORE database.

13 RBPs can affect the splicing of TM9SF2 :

The Knockdown/knockout RNA-Seq assay for TM9SF2 is not avaliable on ENCORE database.