TM7SF2

General Information

Gene Name : TM7SF2
Gene ID : ENSG00000149809.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TM7SF2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TM7SF2	ENSG00000149809.14	2.74	7.70	5.22	ENCSR000AEF
HepG2	TM7SF2	ENSG00000149809.14	72.12	23.74	47.93	ENCSR985KAT
K562	TM7SF2	ENSG00000149809.14	13.46	9.65	11.55	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TM7SF2 is not avaliable on ENCORE database.

Proteins bound to RNA

TM7SF2 RNA is bound by 18 proteins.

CanvasJS.com

eCLIP assay for TM7SF2 is not avaliable on ENCORE database.

18 proteins are bound to TM7SF2 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	64879348	64879440	+	5'-UTR,intron-Proximal	5.70999	55.44464	HepG2	DDX3X
chr11	64879722	64879881	+	intron-Distal	5.92781	26.64987	HepG2	PRPF4
chr11	64880016	64880098	+	5'-UTR,CDS,intron-Distal	3.78715	24.65115	HepG2	DDX3X
chr11	64879445	64879501	+	5'-UTR,CDS,intron-Distal,intron-Proximal	5.62908	21.73822	HepG2	DDX3X
chr11	64879982	64880016	+	5'-UTR,CDS,intron-Distal,intron-Proximal	5.07848	15.71567	HepG2	DDX3X
chr11	64879768	64879905	+	intron-Distal,intron-Proximal	3.38106	14.87546	HepG2	FAM120A
chr11	64882184	64882199	+	3'-UTR,CDS,intron-Proximal	4.45316	13.64823	HepG2	PPIG
chr11	64882552	64882601	+	3'-UTR,CDS,intron-Proximal	4.11388	12.97015	HepG2	PRPF8
chr11	64881032	64881067	+	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	4.41193	12.76865	HepG2	PPIG
chr11	64879779	64879884	+	intron-Distal	4.68066	12.31091	HepG2	CSTF2T
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 42 entries

eCLIP assay for TM7SF2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TM7SF2 is not available on ENCORE database.
132 RBPs can affect the levels of TM7SF2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TM7SF2 is not available on ENCORE database.

132 RBPs can affect the gene expression of TM7SF2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TM7SF2	ENSG00000149809.10	5006.33480	1166.23400	2.10180	189.27410	186.00840	HepG2	PUS1
TM7SF2	ENSG00000149809.10	4258.01200	1165.69200	1.86890	126.04700	123.98900	HepG2	SSB
TM7SF2	ENSG00000149809.10	3369.98640	1095.40240	1.62120	98.32700	95.94270	HepG2	DKC1
TM7SF2	ENSG00000149809.10	587.86730	1589.86510	-1.43530	59.06560	57.19000	HepG2	SRSF9
TM7SF2	ENSG00000149809.10	1581.56200	487.98770	1.69630	56.94750	55.22670	HepG2	TIAL1
TM7SF2	ENSG00000149809.10	607.44750	1756.50390	-1.53190	56.07140	53.95990	HepG2	TAF15
TM7SF2	ENSG00000149809.10	837.65800	1954.24030	-1.22220	48.02680	46.58470	HepG2	SRSF1
TM7SF2	ENSG00000149809.10	1598.30460	689.42250	1.21300	47.87460	45.79490	HepG2	ZC3H8
TM7SF2	ENSG00000149809.10	1069.33630	197.00280	2.44030	44.99810	41.99910	HepG2	RPS3A
TM7SF2	ENSG00000149809.10	387.87620	1342.52590	-1.79130	37.55110	36.25940	HepG2	SRFBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 152 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TM7SF2 is not available on ENCORE database.

21 RBPs can affect the splicing of TM7SF2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	TM7SF2	ENSG00000149809.10	chr11	+	64882184	64882553			64882184	64882304	64882384	64882553	0.05500	0.00000	0.00001	included	HepG2	SF3B4
SE	TM7SF2	ENSG00000149809.10	chr11	+	64883246	64883294			64882968	64883070	64883364	64883429	-0.23200	0.00001	0.00088	excluded	HepG2	SFPQ
SE	TM7SF2	ENSG00000149809.10	chr11	+	64883246	64883294			64882968	64883070	64883364	64883429	-0.06300	0.00001	0.00193	excluded	HepG2	SUPV3L1
MXE	TM7SF2	ENSG00000149809.10	chr11	+	64880691	64880886	64880962	64881066	64880282	64880337	64882184	64882304	-0.11600	0.00001	0.00077	2included	HepG2	TAF15
RI	TM7SF2	ENSG00000149809.10	chr11	+	64880821	64881066			64880821	64880886	64880962	64881066	0.06400	0.00004	0.00060	included	HepG2	U2AF2
RI	TM7SF2	ENSG00000149809.10	chr11	+	64880282	64880886			64880282	64880337	64880691	64880886	0.11900	0.00014	0.00265	included	HepG2	HNRNPK
SE	TM7SF2	ENSG00000149809.10	chr11	+	64883246	64883294			64882974	64883070	64883364	64883429	-0.21900	0.00017	0.03119	excluded	HepG2	HNRNPUL1
MXE	TM7SF2	ENSG00000149809.10	chr11	+	64880691	64880886	64880962	64881066	64880282	64880337	64882184	64882304	0.11300	0.00018	0.01787	1included	HepG2	NOLC1
MXE	TM7SF2	ENSG00000149809.10	chr11	+	64879986	64880183	64880821	64881066	64879350	64879453	64882184	64882304	0.07400	0.00019	0.00980	1included	HepG2	XRN2
RI	TM7SF2	ENSG00000149809.10	chr11	+	64880282	64880886			64880282	64880337	64880691	64880886	0.08800	0.00026	0.00519	included	HepG2	PCBP1

Showing 1 to 10 of 30 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TM7SF2

General Information

Functions

Localization

Domains (AlphaFold: TM7SF2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TM7SF2 is not avaliable on ENCORE database.

18 proteins are bound to TM7SF2 RNA:

eCLIP assay for TM7SF2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TM7SF2 is not available on ENCORE database.

132 RBPs can affect the gene expression of TM7SF2 :

The Knockdown/knockout RNA-Seq assay for TM7SF2 is not available on ENCORE database.

21 RBPs can affect the splicing of TM7SF2 :

The Knockdown/knockout RNA-Seq assay for TM7SF2 is not avaliable on ENCORE database.