SPRED2

General Information

Gene Name : SPRED2
Gene ID : ENSG00000198369.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SPRED2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SPRED2	ENSG00000198369.9	10.23	12.00	11.12	ENCSR000AEF
HepG2	SPRED2	ENSG00000198369.9	34.19	34.16	34.17	ENCSR985KAT
K562	SPRED2	ENSG00000198369.9	30.76	27.52	29.14	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SPRED2 is not avaliable on ENCORE database.

Proteins bound to RNA

SPRED2 RNA is bound by 57 proteins.

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eCLIP assay for SPRED2 is not avaliable on ENCORE database.

57 proteins are bound to SPRED2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	65659328	65659443	-	intron-Distal,intron-Proximal	4.86971	39.62220	HepG2	PCBP2
chr2	65658277	65658369	-	intron-Distal	4.00359	31.91382	HepG2	NKRF
chr2	65659335	65659476	-	intron-Distal,intron-Proximal	4.09689	23.10888	K562	PCBP1
chr2	65538353	65538407	-	3'-UTR,intron-Distal	5.02157	22.75149	K562	PUM2
chr2	65538082	65538168	-	3'-UTR,intron-Distal	6.01247	22.32774	K562	PUM2
chr2	65659242	65659314	-	5'-UTR,intron-Distal,intron-Proximal	4.47265	21.27740	HepG2	PCBP2
chr2	65659310	65659430	-	5'-UTR,intron-Distal,intron-Proximal	3.52369	20.86829	HepG2	DDX59
chr2	65659557	65659625	-	intron-Distal	3.81053	20.14506	HepG2	DDX3X
chr2	65557637	65557705	-	intron-Distal	4.63024	17.74421	HepG2	RBFOX2
chr2	65658872	65658954	-	intron-Distal	3.86847	17.40117	HepG2	NKRF
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 158 entries

eCLIP assay for SPRED2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SPRED2 is not available on ENCORE database.
108 RBPs can affect the levels of SPRED2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SPRED2 is not available on ENCORE database.

108 RBPs can affect the gene expression of SPRED2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SPRED2	ENSG00000198369.5	766.55340	3140.06080	-2.03430	149.60730	147.44390	HepG2	SSB
SPRED2	ENSG00000198369.5	1201.23770	3617.49480	-1.59050	106.54350	104.63410	HepG2	SRSF1
SPRED2	ENSG00000198369.5	1435.61280	3704.71890	-1.36770	74.88360	73.03100	HepG2	NELFE
SPRED2	ENSG00000198369.5	573.42490	1990.40540	-1.79540	56.19930	54.08700	HepG2	HNRNPA1
SPRED2	ENSG00000198369.5	1120.05050	2303.83460	-1.04050	46.14470	43.83570	HepG2	DDX19B
SPRED2	ENSG00000198369.5	1085.85090	2383.24630	-1.13410	45.01550	43.14550	HepG2	DKC1
SPRED2	ENSG00000198369.5	626.45890	1847.02370	-1.55990	43.35830	41.16260	HepG2	DDX21
SPRED2	ENSG00000198369.5	2098.02420	3450.61990	-0.71780	23.52370	22.03460	HepG2	RECQL
SPRED2	ENSG00000198369.5	1139.89110	2136.99200	-0.90670	21.62280	20.47030	HepG2	TIAL1
SPRED2	ENSG00000198369.5	670.47860	1553.13090	-1.21190	22.00930	20.04400	HepG2	XRN2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 128 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SPRED2 is not available on ENCORE database.

12 RBPs can affect the splicing of SPRED2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	SPRED2	ENSG00000198369.5	chr2	-	65571569	65571728			65561762	65561907	65571852	65571920	0.17000	0.00001	included	HepG2	U2AF1
SE	SPRED2	ENSG00000198369.5	chr2	-	65571569	65571728			65561762	65561907	65571852	65571920	0.17400	0.00000	included	HepG2	U2AF2
SE	SPRED2	ENSG00000198369.5	chr2	-	65571569	65571728			65561762	65561907	65571852	65571920	0.39100	0.00000	included	K562	PUS1
SE	SPRED2	ENSG00000198369.5	chr2	-	65611807	65612039			65571852	65572030	65659095	65659218	0.06500	0.00055	included	HepG2	SFPQ
SE	SPRED2	ENSG00000198369.5	chr2	-	65571569	65571728			65561762	65561907	65571852	65571920	0.49200	0.00000	included	K562	U2AF1
SE	SPRED2	ENSG00000198369.5	chr2	-	65571569	65571728			65561762	65561907	65571852	65571920	0.26400	0.00001	included	K562	RBM15
SE	SPRED2	ENSG00000198369.5	chr2	-	65571569	65571728			65561762	65561907	65571852	65571920	0.25400	0.00004	included	K562	AGGF1
A3SS	SPRED2	ENSG00000198369.5	chr2	-	65561738	65561960			65561738	65561907	65571852	65572071	0.16700	0.00000	longer	K562	AQR
MXE	SPRED2	ENSG00000198369.5	chr2	-	65559120	65559185	65561738	65561936	65543867	65544017	65571852	65572030	0.08400	0.00001	1included	K562	AQR
MXE	SPRED2	ENSG00000198369.5	chr2	-	65559120	65559185	65561738	65561907	65543867	65544017	65571852	65572030	-0.29500	0.00000	2included	HepG2	U2AF2

Showing 1 to 10 of 21 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SPRED2

General Information

Functions

Localization

Domains (AlphaFold: SPRED2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SPRED2 is not avaliable on ENCORE database.

57 proteins are bound to SPRED2 RNA:

eCLIP assay for SPRED2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SPRED2 is not available on ENCORE database.

108 RBPs can affect the gene expression of SPRED2 :

The Knockdown/knockout RNA-Seq assay for SPRED2 is not available on ENCORE database.

12 RBPs can affect the splicing of SPRED2 :

The Knockdown/knockout RNA-Seq assay for SPRED2 is not avaliable on ENCORE database.