SMOC1

General Information

Gene Name : SMOC1
Gene ID : ENSG00000198732.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SMOC1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SMOC1	ENSG00000198732.10	0.00	0.00	0.00	ENCSR000AEF
HepG2	SMOC1	ENSG00000198732.10	33.37	25.24	29.30	ENCSR985KAT
K562	SMOC1	ENSG00000198732.10	0.00	0.00	0.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SMOC1 is not avaliable on ENCORE database.

Proteins bound to RNA

SMOC1 RNA is bound by 27 proteins.

CanvasJS.com

eCLIP assay for SMOC1 is not avaliable on ENCORE database.

27 proteins are bound to SMOC1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr14	70346137	70346196	+	5'-UTR,intron-Distal	4.95549	34.05117	HepG2	DDX3X
chr14	70346212	70346311	+	5'-UTR,intron-Distal	3.38047	23.76563	HepG2	DDX3X
chr14	70346341	70346421	+	5'-UTR,CDS,intron-Distal	3.58143	16.09073	HepG2	DDX3X
chr14	70386180	70386250	+	intron-Distal	5.90104	15.78113	HepG2	QKI
chr14	70442431	70442504	+	CDS,intron-Proximal	5.82307	13.50950	HepG2	SND1
chr14	70420274	70420332	+	intron-Proximal	5.27293	12.12214	HepG2	RBM22
chr14	70442527	70442582	+	CDS,intron-Proximal	5.50974	10.43516	HepG2	PRPF8
chr14	70449651	70449709	+	intron-Distal	5.10799	9.76145	HepG2	XPO5
chr14	70469102	70469165	+	intron-Distal	5.78927	9.05409	HepG2	XPO5
chr14	70477469	70477534	+	CDS,intron-Proximal	4.78809	8.98365	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 59 entries

eCLIP assay for SMOC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SMOC1 is not available on ENCORE database.
101 RBPs can affect the levels of SMOC1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SMOC1 is not available on ENCORE database.

101 RBPs can affect the gene expression of SMOC1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SMOC1	ENSG00000198732.6	848.73340	2188.42090	-1.36650	62.56400	60.98490	HepG2	SRSF1
SMOC1	ENSG00000198732.6	790.87280	2013.81730	-1.34840	55.41960	53.65920	HepG2	PTBP1
SMOC1	ENSG00000198732.6	407.29160	1235.57500	-1.60100	48.93650	47.27720	HepG2	RBM22
SMOC1	ENSG00000198732.6	1122.66970	2241.16990	-0.99730	33.87540	32.43850	HepG2	NELFE
SMOC1	ENSG00000198732.6	271.22140	838.33220	-1.62810	33.97310	32.23000	HepG2	RPS19
SMOC1	ENSG00000198732.6	702.96990	2181.46960	-1.63380	33.89820	31.87140	HepG2	MATR3
SMOC1	ENSG00000198732.6	1115.68740	2096.61030	-0.91010	28.70370	27.14820	HepG2	SF3B4
SMOC1	ENSG00000198732.6	790.24040	1483.96180	-0.90910	25.89550	24.31350	HepG2	SUCLG1
SMOC1	ENSG00000198732.6	945.40630	2168.60660	-1.19780	22.54620	20.78230	HepG2	FXR1
SMOC1	ENSG00000198732.6	1375.54730	764.67880	0.84700	21.75830	20.36400	HepG2	TRIM56
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 101 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SMOC1 is not available on ENCORE database.

4 RBPs can affect the splicing of SMOC1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SMOC1	ENSG00000198732.6	chr14	+	70462715	70462790	70461116	70461197	70477470	70477663	0.09700	0.00003	0.00280	included	HepG2	MATR3
SE	SMOC1	ENSG00000198732.6	chr14	+	70462715	70462790	70461116	70461197	70477470	70477663	0.10600	0.00006	0.02542	included	HepG2	ILF3
SE	SMOC1	ENSG00000198732.6	chr14	+	70467412	70467460	70461116	70461197	70477470	70477663	0.05500	0.00027	0.00878	included	HepG2	SRSF1
SE	SMOC1	ENSG00000198732.6	chr14	+	70459100	70459190	70444634	70444682	70477470	70477663	-0.48700	0.00244	0.06105	excluded	HepG2	SF3A3

Showing 1 to 4 of 4 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SMOC1

General Information

Functions

Localization

Domains (AlphaFold: SMOC1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SMOC1 is not avaliable on ENCORE database.

27 proteins are bound to SMOC1 RNA:

eCLIP assay for SMOC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SMOC1 is not available on ENCORE database.

101 RBPs can affect the gene expression of SMOC1 :

The Knockdown/knockout RNA-Seq assay for SMOC1 is not available on ENCORE database.

4 RBPs can affect the splicing of SMOC1 :

The Knockdown/knockout RNA-Seq assay for SMOC1 is not avaliable on ENCORE database.