RBPMS

General Information

Gene Name : RBPMS
Gene ID : ENSG00000157110.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RBPMS)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RBPMS	ENSG00000157110.15	0.00	0.03	0.01	ENCSR000AEF
HepG2	RBPMS	ENSG00000157110.15	40.62	41.11	40.86	ENCSR985KAT
K562	RBPMS	ENSG00000157110.15	0.00	0.00	0.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RBPMS is not avaliable on ENCORE database.

Proteins bound to RNA

RBPMS RNA is bound by 25 proteins.

CanvasJS.com

eCLIP assay for RBPMS is not avaliable on ENCORE database.

25 proteins are bound to RBPMS RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	30242263	30242339	+	5'-UTR	6.56625	70.19380	HepG2	PCBP2
chr8	30288921	30289008	+	intron-Distal	6.39380	51.96416	HepG2	PTBP1
chr8	30242140	30242230	+	5'-UTR	6.41142	51.19961	HepG2	PCBP2
chr8	30416348	30416398	+	intron-Proximal	7.56557	29.27458	HepG2	SF3A3
chr8	30414333	30414447	+	intron-Distal,intron-Proximal	5.98257	27.20804	HepG2	PCBP2
chr8	30242339	30242401	+	5'-UTR	6.06116	26.79427	HepG2	PCBP2
chr8	30402188	30402331	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.46367	19.04739	HepG2	QKI
chr8	30256236	30256307	+	intron-Distal	5.02013	16.87745	HepG2	QKI
chr8	30242351	30242428	+	5'-UTR	3.35406	15.69390	HepG2	DDX59
chr8	30310422	30310478	+	intron-Distal	5.02489	12.90682	HepG2	SUGP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 69 entries

eCLIP assay for RBPMS is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RBPMS is not available on ENCORE database.
94 RBPs can affect the levels of RBPMS.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RBPMS is not available on ENCORE database.

94 RBPs can affect the gene expression of RBPMS :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RBPMS	ENSG00000157110.11	390.58360	1700.02400	-2.12190	111.04140	109.06660	HepG2	SSB
RBPMS	ENSG00000157110.11	3239.09710	1311.12730	1.30470	35.41050	33.69430	HepG2	BOP1
RBPMS	ENSG00000157110.11	833.76540	1768.13440	-1.08450	33.91100	32.47260	HepG2	NELFE
RBPMS	ENSG00000157110.11	2458.57530	1386.92780	0.82580	33.84450	31.81310	HepG2	DAZAP1
RBPMS	ENSG00000157110.11	1760.15020	924.55460	0.92880	31.49800	29.66550	HepG2	SAFB2
RBPMS	ENSG00000157110.11	852.24900	1646.84290	-0.95040	26.81740	25.24890	HepG2	RECQL
RBPMS	ENSG00000157110.11	930.03470	1726.50940	-0.89250	25.43200	24.31420	HepG2	SRSF1
RBPMS	ENSG00000157110.11	557.58620	1460.51130	-1.38920	21.21890	19.76230	HepG2	DKC1
RBPMS	ENSG00000157110.11	2491.22940	1203.63880	1.04940	20.78810	19.12360	HepG2	CPSF6
RBPMS	ENSG00000157110.11	2967.87800	1957.99600	0.60000	18.16640	17.18130	HepG2	SRFBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 94 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RBPMS is not available on ENCORE database.

8 RBPs can affect the splicing of RBPMS :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RBPMS	ENSG00000157110.11	chr8	+	30423773	30423877			30416403	30416473	30428153	30429734	-0.23600	0.00000	0.00000	excluded	HepG2	HNRNPK
SE	RBPMS	ENSG00000157110.11	chr8	+	30402680	30402737			30402010	30402141	30404808	30405034	0.07800	0.00001	0.00193	included	HepG2	RBM22
MXE	RBPMS	ENSG00000157110.11	chr8	+	30402010	30402141	30423773	30423877	30361802	30361953	30428153	30429773	0.10700	0.00002	0.00114	1included	HepG2	DDX55
SE	RBPMS	ENSG00000157110.11	chr8	+	30402680	30402737			30402010	30402141	30404808	30405034	0.08000	0.00005	0.00107	included	HepG2	U2AF2
SE	RBPMS	ENSG00000157110.11	chr8	+	30421894	30421969			30416403	30416473	30423773	30423877	0.07300	0.00010	0.00714	included	HepG2	MATR3
MXE	RBPMS	ENSG00000157110.11	chr8	+	30407016	30407102	30416403	30416473	30402010	30402141	30423773	30423877	0.07000	0.00029	0.03451	1included	HepG2	SSB
SE	RBPMS	ENSG00000157110.11	chr8	+	30402680	30402737			30402010	30402141	30404808	30405034	0.11500	0.00039	0.03350	included	HepG2	IGF2BP3
SE	RBPMS	ENSG00000157110.11	chr8	+	30407016	30407102			30402010	30402141	30416403	30416473	0.07300	0.00050	0.05868	included	HepG2	SSB
RI	RBPMS	ENSG00000157110.11	chr8	+	30402010	30403108			30402010	30402141	30402877	30403108	0.05800	0.01167	0.08929	included	HepG2	U2AF1

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RBPMS

General Information

Functions

Localization

Domains (AlphaFold: RBPMS)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RBPMS is not avaliable on ENCORE database.

25 proteins are bound to RBPMS RNA:

eCLIP assay for RBPMS is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RBPMS is not available on ENCORE database.

94 RBPs can affect the gene expression of RBPMS :

The Knockdown/knockout RNA-Seq assay for RBPMS is not available on ENCORE database.

8 RBPs can affect the splicing of RBPMS :

The Knockdown/knockout RNA-Seq assay for RBPMS is not avaliable on ENCORE database.