RAB5C

General Information

Gene Name : RAB5C
Gene ID : ENSG00000108774.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RAB5C)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	RAB5C	ENSG00000108774.14	25.75	54.91	40.33	ENCSR000AEF
HepG2	RAB5C	ENSG00000108774.14	218.26	152.04	185.15	ENCSR985KAT
K562	RAB5C	ENSG00000108774.14	119.54	111.53	115.53	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RAB5C is not avaliable on ENCORE database.

Proteins bound to RNA

RAB5C RNA is bound by 26 proteins.

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eCLIP assay for RAB5C is not avaliable on ENCORE database.

26 proteins are bound to RAB5C RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	40298976	40299063	-	intron-Distal	7.03301	20.82570	K562	PTBP1
chr17	40277599	40277662	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.86786	17.63117	K562	PUM2
chr17	40277619	40277642	-	3'-UTR,intron-Distal,intron-Proximal	3.90275	16.02177	K562	PABPC4
chr17	40298979	40299077	-	intron-Distal	5.02252	15.23552	HepG2	PTBP1
chr17	40280405	40280462	-	intron-Distal,intron-Proximal	5.65642	14.41773	HepG2	SF3A3
chr17	40282418	40282464	-	CDS,intron-Distal	4.30447	14.27079	K562	YBX3
chr17	40277157	40277218	-	3'-UTR,intron-Distal	4.91720	13.87936	K562	IGF2BP2
chr17	40277642	40277660	-	3'-UTR,5'-UTR,intron-Distal,intron-Proximal	3.84062	13.33666	K562	PABPC4
chr17	40277009	40277072	-	3'-UTR,intron-Distal	5.14469	13.04183	K562	PABPC4
chr17	40277692	40277739	-	3'-UTR,5'-UTR,intron-Distal	4.46756	12.71857	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 55 entries

eCLIP assay for RAB5C is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RAB5C is not available on ENCORE database.
101 RBPs can affect the levels of RAB5C.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RAB5C is not available on ENCORE database.

101 RBPs can affect the gene expression of RAB5C :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RAB5C	ENSG00000108774.10	2221.19970	1049.18720	1.08200	36.08900	34.02370	K562	FXR1
RAB5C	ENSG00000108774.10	1335.21510	2649.19650	-0.98850	31.28670	29.66700	HepG2	TAF15
RAB5C	ENSG00000108774.10	3517.80700	1730.21710	1.02360	26.86630	25.27620	HepG2	RPS19
RAB5C	ENSG00000108774.10	4481.51300	2928.04100	0.61400	21.44660	20.01150	HepG2	UTP3
RAB5C	ENSG00000108774.10	2901.89020	1775.25400	0.70890	21.12740	19.67290	K562	AGGF1
RAB5C	ENSG00000108774.10	5141.74100	3335.48820	0.62430	17.01790	15.94860	HepG2	ZNF622
RAB5C	ENSG00000108774.10	3745.33470	2096.03050	0.83730	15.91060	14.66010	K562	AQR
RAB5C	ENSG00000108774.10	2088.61870	3820.22490	-0.87110	16.03910	14.55170	HepG2	CPSF6
RAB5C	ENSG00000108774.10	2220.62060	1196.72090	0.89180	14.38430	12.66140	K562	PRPF8
RAB5C	ENSG00000108774.10	2048.05070	4551.64810	-1.15210	13.80450	12.07960	HepG2	SNRNP70
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 119 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RAB5C is not available on ENCORE database.

9 RBPs can affect the splicing of RAB5C :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	RAB5C	ENSG00000108774.10	chr17	-	40289779	40289896			40282354	40282608	40306910	40307022	-0.06200	0.00000	0.00061	excluded	HepG2	NOL12
A3SS	RAB5C	ENSG00000108774.10	chr17	-	40278772	40278979			40278772	40278866	40280278	40280477	0.08800	0.00000	0.00000	longer	K562	AQR
SE	RAB5C	ENSG00000108774.10	chr17	-	40289779	40289896			40282354	40282608	40306910	40307022	-0.06700	0.00001	0.00015	excluded	HepG2	U2AF2
SE	RAB5C	ENSG00000108774.10	chr17	-	40289779	40289896			40282354	40282608	40306910	40307022	-0.06900	0.00001	0.00316	excluded	K562	METAP2
SE	RAB5C	ENSG00000108774.10	chr17	-	40289779	40289896			40282354	40282608	40306910	40307022	-0.06700	0.00001	0.00544	excluded	K562	GPKOW
SE	RAB5C	ENSG00000108774.10	chr17	-	40289779	40289896			40282354	40282608	40306910	40307022	0.11100	0.00006	0.00383	included	HepG2	HNRNPC
MXE	RAB5C	ENSG00000108774.10	chr17	-	40285216	40285384	40289779	40289896	40282354	40282608	40306910	40307022	-0.67100	0.00016	0.04124	2included	K562	GPKOW
SE	RAB5C	ENSG00000108774.10	chr17	-	40289779	40289896			40282354	40282608	40306910	40307022	-0.06200	0.00028	0.03748	excluded	K562	FMR1
SE	RAB5C	ENSG00000108774.10	chr17	-	40289779	40289896			40282354	40282608	40306910	40307022	-0.06100	0.00047	0.05138	excluded	K562	CPSF6
SE	RAB5C	ENSG00000108774.10	chr17	-	40289779	40289896			40282354	40282608	40306910	40307022	-0.05300	0.00105	0.04725	excluded	HepG2	SFPQ

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RAB5C

General Information

Functions

Localization

Domains (AlphaFold: RAB5C)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RAB5C is not avaliable on ENCORE database.

26 proteins are bound to RAB5C RNA:

eCLIP assay for RAB5C is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RAB5C is not available on ENCORE database.

101 RBPs can affect the gene expression of RAB5C :

The Knockdown/knockout RNA-Seq assay for RAB5C is not available on ENCORE database.

9 RBPs can affect the splicing of RAB5C :

The Knockdown/knockout RNA-Seq assay for RAB5C is not avaliable on ENCORE database.