PFDN5

General Information

Gene Name : PFDN5
Gene ID : ENSG00000123349.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PFDN5)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PFDN5	ENSG00000123349.13	338.56	330.37	334.47	ENCSR000AEF
HepG2	PFDN5	ENSG00000123349.13	406.81	365.36	386.09	ENCSR985KAT
K562	PFDN5	ENSG00000123349.13	406.85	362.91	384.88	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PFDN5 is not avaliable on ENCORE database.

Proteins bound to RNA

PFDN5 RNA is bound by 20 proteins.

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eCLIP assay for PFDN5 is not avaliable on ENCORE database.

20 proteins are bound to PFDN5 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	53693126	53693219	+	3'-UTR	4.94192	400.00000	K562	PABPC4
chr12	53689648	53689674	+	CDS,intron-Distal	4.95092	400.00000	K562	PABPC4
chr12	53689629	53689648	+	CDS,intron-Distal	5.72246	400.00000	K562	PABPC4
chr12	53691675	53691691	+	3'-UTR,CDS,intron-Distal	5.94124	68.48454	K562	LIN28B
chr12	53691666	53691675	+	3'-UTR,CDS,intron-Distal	6.14660	61.16102	K562	LIN28B
chr12	53689396	53689423	+	CDS	5.17604	59.74259	K562	PABPC4
chr12	53689621	53689629	+	CDS,intron-Distal,intron-Proximal	5.18673	50.84260	K562	PABPC4
chr12	53691691	53691710	+	3'-UTR,CDS,intron-Distal,intron-Proximal	5.41986	47.44311	K562	LIN28B
chr12	53691660	53691666	+	3'-UTR,CDS,intron-Distal	5.61572	43.94954	K562	LIN28B
chr12	53689678	53689722	+	CDS,intron-Distal	3.79248	38.88250	K562	PABPC4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 71 entries

eCLIP assay for PFDN5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PFDN5 is not available on ENCORE database.
102 RBPs can affect the levels of PFDN5.

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The Knockdown/knockout RNA-Seq assay for PFDN5 is not available on ENCORE database.

102 RBPs can affect the gene expression of PFDN5 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PFDN5	ENSG00000123349.9	1870.40050	3839.48170	-1.03760	48.02350	46.15270	HepG2	SF3B4
PFDN5	ENSG00000123349.9	11160.70480	4282.35000	1.38190	44.91940	42.65890	K562	PUS1
PFDN5	ENSG00000123349.9	2257.24510	4104.22310	-0.86250	34.23880	32.79200	HepG2	NELFE
PFDN5	ENSG00000123349.9	2149.64150	3993.97250	-0.89370	27.54110	25.86770	HepG2	QKI
PFDN5	ENSG00000123349.9	2269.19710	3822.59460	-0.75240	27.01250	25.43980	HepG2	RECQL
PFDN5	ENSG00000123349.9	2193.92710	3687.88410	-0.74930	26.16070	24.80980	HepG2	PTBP1
PFDN5	ENSG00000123349.9	7022.71340	4150.36250	0.75870	22.02690	20.53290	K562	AGGF1
PFDN5	ENSG00000123349.9	2331.29170	3624.27820	-0.63660	19.47900	18.10270	HepG2	PCBP1
PFDN5	ENSG00000123349.9	2132.52770	3260.44180	-0.61250	18.82270	17.61820	HepG2	SRSF9
PFDN5	ENSG00000123349.9	2687.23720	4007.62100	-0.57660	18.31410	17.32260	HepG2	SRSF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 112 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PFDN5 is not available on ENCORE database.

47 RBPs can affect the splicing of PFDN5 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	PFDN5	ENSG00000123349.9	chr12	+	53689622	53689725	53689074	53689423	53691633	53691708	-0.08400	0.00015	excluded	K562	SF3B4
SE	PFDN5	ENSG00000123349.9	chr12	+	53691633	53691708	53689308	53689423	53691828	53691934	-0.07600	0.00016	excluded	K562	PRPF8
SE	PFDN5	ENSG00000123349.9	chr12	+	53689622	53689725	53689325	53689423	53691633	53691708	-0.20400	0.00000	excluded	K562	PCBP1
SE	PFDN5	ENSG00000123349.9	chr12	+	53689622	53689725	53689325	53689423	53691633	53691708	-0.15800	0.00000	excluded	HepG2	DKC1
SE	PFDN5	ENSG00000123349.9	chr12	+	53689622	53689725	53689074	53689423	53691633	53691708	0.07800	0.00000	included	K562	AQR
SE	PFDN5	ENSG00000123349.9	chr12	+	53691633	53691708	53689308	53689423	53691828	53691934	-0.09300	0.00003	excluded	HepG2	UCHL5
SE	PFDN5	ENSG00000123349.9	chr12	+	53689622	53689725	53689325	53689423	53691633	53691708	0.06800	0.00801	included	K562	DHX30
SE	PFDN5	ENSG00000123349.9	chr12	+	53689622	53689725	53689325	53689423	53691633	53691708	-0.11700	0.00008	excluded	HepG2	PCBP2
SE	PFDN5	ENSG00000123349.9	chr12	+	53689622	53689725	53689325	53689423	53691633	53691708	-0.08500	0.00000	excluded	HepG2	LARP4
SE	PFDN5	ENSG00000123349.9	chr12	+	53689622	53689725	53689325	53689423	53691633	53691708	0.11600	0.00004	included	HepG2	HNRNPUL1

Showing 1 to 10 of 100 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PFDN5

General Information

Functions

Localization

Domains (AlphaFold: PFDN5)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PFDN5 is not avaliable on ENCORE database.

20 proteins are bound to PFDN5 RNA:

eCLIP assay for PFDN5 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PFDN5 is not available on ENCORE database.

102 RBPs can affect the gene expression of PFDN5 :

The Knockdown/knockout RNA-Seq assay for PFDN5 is not available on ENCORE database.

47 RBPs can affect the splicing of PFDN5 :

The Knockdown/knockout RNA-Seq assay for PFDN5 is not avaliable on ENCORE database.