H2AFZ

General Information

Gene Name : H2AFZ
Gene ID : ENSG00000164032.11
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: H2AFZ)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	H2AFZ	ENSG00000164032.11	346.24	443.46	394.85	ENCSR000AEF
HepG2	H2AFZ	ENSG00000164032.11	375.30	433.38	404.34	ENCSR985KAT
K562	H2AFZ	ENSG00000164032.11	537.22	420.05	478.63	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for H2AFZ is not avaliable on ENCORE database.

Proteins bound to RNA

H2AFZ RNA is bound by 42 proteins.

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eCLIP assay for H2AFZ is not avaliable on ENCORE database.

42 proteins are bound to H2AFZ RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	100871324	100871367	-	5'-UTR,CDS,intron-Distal	4.12971	400.00000	K562	DDX3X
chr4	100870859	100870898	-	CDS,intron-Distal,intron-Proximal	3.98369	400.00000	K562	DDX3X
chr4	100869319	100869360	-	3'-UTR,intron-Distal,intron-Proximal	7.99060	86.99901	HepG2	SUB1
chr4	100870875	100870946	-	CDS,intron-Distal,intron-Proximal	5.53364	80.48369	K562	AQR
chr4	100869360	100869426	-	3'-UTR,intron-Distal	7.53956	71.58023	HepG2	SUB1
chr4	100869255	100869303	-	3'-UTR,intron-Distal,intron-Proximal	4.50896	57.22209	K562	PUM2
chr4	100871371	100871409	-	5'-UTR,intron-Distal	3.62836	46.85276	K562	DDX3X
chr4	100869546	100869569	-	3'-UTR,intron-Distal	4.86276	44.98384	K562	YBX3
chr4	100869333	100869361	-	3'-UTR,intron-Distal	5.15564	29.49736	K562	NOLC1
chr4	100869582	100869599	-	3'-UTR,intron-Distal	4.87103	29.23556	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 94 entries

eCLIP assay for H2AFZ is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for H2AFZ is not available on ENCORE database.
135 RBPs can affect the levels of H2AFZ.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for H2AFZ is not available on ENCORE database.

135 RBPs can affect the gene expression of H2AFZ :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
H2AFZ	ENSG00000164032.7	1460.35250	5622.00530	-1.94480	180.05070	177.73350	HepG2	SSB
H2AFZ	ENSG00000164032.7	319.46650	2728.48090	-3.09440	109.81650	106.15410	HepG2	RRP9
H2AFZ	ENSG00000164032.7	624.09480	2367.20600	-1.92330	85.45720	83.40370	HepG2	TIAL1
H2AFZ	ENSG00000164032.7	484.75490	1495.10160	-1.62490	79.53600	77.66880	HepG2	ZNF622
H2AFZ	ENSG00000164032.7	716.32410	2608.40460	-1.86450	63.19080	60.98760	HepG2	RPLP0
H2AFZ	ENSG00000164032.7	1362.94590	2846.94830	-1.06270	55.97010	53.89780	HepG2	CKAP4
H2AFZ	ENSG00000164032.7	774.01310	2204.61410	-1.51010	42.90630	40.97170	HepG2	HNRNPA1
H2AFZ	ENSG00000164032.7	498.86010	1454.43280	-1.54370	42.06340	40.18520	HepG2	RPS19
H2AFZ	ENSG00000164032.7	3304.58680	5974.20290	-0.85430	37.64660	35.62230	HepG2	AUH
H2AFZ	ENSG00000164032.7	866.43800	2972.51410	-1.77850	35.54550	33.57880	HepG2	EIF2S1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 169 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for H2AFZ is not available on ENCORE database.

4 RBPs can affect the splicing of H2AFZ :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	H2AFZ	ENSG00000164032.7	chr4	-	100869244	100870097			100869244	100869680	100869967	100870097	0.13200	0.00000	0.00000	included	K562	AQR
MXE	H2AFZ	ENSG00000164032.7	chr4	-	100869967	100870097	100870429	100870543	100869244	100869680	100870819	100870897	0.13000	0.00006	0.00743	1included	K562	TRA2A
RI	H2AFZ	ENSG00000164032.7	chr4	-	100869244	100870097			100869244	100869680	100869967	100870097	0.06400	0.00020	0.00788	included	HepG2	FTO
MXE	H2AFZ	ENSG00000164032.7	chr4	-	100870429	100870543	100870819	100870897	100869967	100870097	100871324	100871545	0.06700	0.00200	0.09702	1included	K562	TRA2A
MXE	H2AFZ	ENSG00000164032.7	chr4	-	100869967	100870097	100870429	100870543	100869244	100869680	100870819	100870897	0.09800	0.00287	0.05916	1included	K562	TARDBP
MXE	H2AFZ	ENSG00000164032.7	chr4	-	100870429	100870543	100870819	100870897	100869967	100870097	100871324	100871545	-0.06600	0.00642	0.04427	2included	K562	AQR
MXE	H2AFZ	ENSG00000164032.7	chr4	-	100870429	100870588	100870819	100870897	100869967	100870097	100871324	100871545	-0.06400	0.00833	0.05459	2included	K562	AQR

Showing 1 to 7 of 7 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

H2AFZ

General Information

Functions

Localization

Domains (AlphaFold: H2AFZ)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for H2AFZ is not avaliable on ENCORE database.

42 proteins are bound to H2AFZ RNA:

eCLIP assay for H2AFZ is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for H2AFZ is not available on ENCORE database.

135 RBPs can affect the gene expression of H2AFZ :

The Knockdown/knockout RNA-Seq assay for H2AFZ is not available on ENCORE database.

4 RBPs can affect the splicing of H2AFZ :

The Knockdown/knockout RNA-Seq assay for H2AFZ is not avaliable on ENCORE database.