GYPA

General Information

Gene Name : GYPA
Gene ID : ENSG00000170180.21
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GYPA)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GYPA	ENSG00000170180.21	0.00	0.00	0.00	ENCSR000AEF
HepG2	GYPA	ENSG00000170180.21	0.00	0.00	0.00	ENCSR985KAT
K562	GYPA	ENSG00000170180.21	171.26	187.17	179.21	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GYPA is not avaliable on ENCORE database.

Proteins bound to RNA

GYPA RNA is bound by 12 proteins.

CanvasJS.com

eCLIP assay for GYPA is not avaliable on ENCORE database.

12 proteins are bound to GYPA RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	145032392	145032469	-	3'-UTR,intron-Distal,intron-Proximal	3.64931	40.00590	K562	PUM2
chr4	145038031	145038081	-	3'-UTR,CDS,intron-Distal	5.54327	27.28427	K562	SND1
chr4	145032158	145032208	-	3'-UTR,intron-Distal,intron-Proximal	3.37135	22.32358	K562	PUM2
chr4	145032241	145032332	-	3'-UTR,intron-Distal	4.66292	16.24647	HepG2	SUB1
chr4	145031918	145031950	-	3'-UTR,intron-Distal	4.37582	15.60617	K562	HNRNPL
chr4	145039877	145039906	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.71355	14.10373	K562	SND1
chr4	145038004	145038031	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.29396	13.17173	K562	SND1
chr4	145032331	145032454	-	3'-UTR,intron-Distal,intron-Proximal	4.94908	12.27606	K562	IGF2BP1
chr4	145031883	145031918	-	3'-UTR,intron-Distal	4.05882	12.06403	K562	HNRNPL
chr4	145039865	145039877	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.26306	11.14897	K562	SND1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 29 entries

eCLIP assay for GYPA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GYPA is not available on ENCORE database.
96 RBPs can affect the levels of GYPA.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GYPA is not available on ENCORE database.

96 RBPs can affect the gene expression of GYPA :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GYPA	ENSG00000170180.15	6778.80430	3648.27160	0.89370	45.32190	42.93920	K562	NSUN2
GYPA	ENSG00000170180.15	6034.31630	3283.24490	0.87800	44.30670	41.82030	K562	MTPAP
GYPA	ENSG00000170180.15	5806.45350	2128.67710	1.44760	40.48040	37.10450	K562	UCHL5
GYPA	ENSG00000170180.15	16286.12870	6934.27270	1.23170	29.93110	27.28850	K562	CELF1
GYPA	ENSG00000170180.15	3120.14920	5192.61140	-0.73480	25.25090	22.29330	K562	CPEB4
GYPA	ENSG00000170180.15	4626.57450	2011.02100	1.20190	24.02170	21.13730	K562	SUPV3L1
GYPA	ENSG00000170180.15	7375.07300	4220.69460	0.80510	21.97930	19.86360	K562	POLR2G
GYPA	ENSG00000170180.15	5492.98580	2123.91610	1.37080	23.29050	19.62770	K562	RRP9
GYPA	ENSG00000170180.15	11127.87080	5502.74010	1.01590	20.06070	17.90620	K562	PCBP3
GYPA	ENSG00000170180.15	8272.37560	3441.79250	1.26500	19.13950	17.20500	K562	WDR43
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 96 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GYPA is not available on ENCORE database.

35 RBPs can affect the splicing of GYPA :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	GYPA	ENSG00000170180.15	chr4	-	145041642	145041741	145040838	145040934	145061751	145061788	0.07400	0.00000	included	K562	SRSF1
SE	GYPA	ENSG00000170180.15	chr4	-	145035841	145035920	145032546	145032563	145038006	145038092	-0.06300	0.00000	excluded	K562	SF3B4
SE	GYPA	ENSG00000170180.15	chr4	-	145039866	145039905	145038006	145038092	145040838	145040934	-0.33600	0.00000	excluded	K562	SF3B4
SE	GYPA	ENSG00000170180.15	chr4	-	145035841	145035964	145030456	145032563	145038006	145038129	-0.07100	0.00008	excluded	K562	AQR
SE	GYPA	ENSG00000170180.15	chr4	-	145039866	145039905	145038006	145038092	145040838	145040934	-0.09900	0.00000	excluded	K562	AQR
SE	GYPA	ENSG00000170180.15	chr4	-	145041642	145041741	145040515	145040934	145061751	145061788	-0.09900	0.00000	excluded	K562	PUS1
SE	GYPA	ENSG00000170180.15	chr4	-	145035841	145035920	145032546	145032563	145038006	145038092	-0.08700	0.00000	excluded	K562	U2AF1
SE	GYPA	ENSG00000170180.15	chr4	-	145041642	145041741	145040838	145040934	145061751	145061788	0.05200	0.00006	included	K562	HNRNPL
SE	GYPA	ENSG00000170180.15	chr4	-	145039866	145039905	145038006	145038092	145040838	145040934	-0.08900	0.00000	excluded	K562	UTP18
SE	GYPA	ENSG00000170180.15	chr4	-	145041642	145041741	145040515	145040934	145061751	145061788	-0.10400	0.00000	excluded	K562	UTP18

Showing 1 to 10 of 58 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GYPA

General Information

Functions

Localization

Domains (AlphaFold: GYPA)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GYPA is not avaliable on ENCORE database.

12 proteins are bound to GYPA RNA:

eCLIP assay for GYPA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GYPA is not available on ENCORE database.

96 RBPs can affect the gene expression of GYPA :

The Knockdown/knockout RNA-Seq assay for GYPA is not available on ENCORE database.

35 RBPs can affect the splicing of GYPA :

The Knockdown/knockout RNA-Seq assay for GYPA is not avaliable on ENCORE database.