GNPDA1

General Information

Gene Name : GNPDA1
Gene ID : ENSG00000113552.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GNPDA1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GNPDA1	ENSG00000113552.15	3.28	3.76	3.52	ENCSR000AEF
HepG2	GNPDA1	ENSG00000113552.15	39.98	50.14	45.06	ENCSR985KAT
K562	GNPDA1	ENSG00000113552.15	33.35	43.09	38.22	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GNPDA1 is not avaliable on ENCORE database.

Proteins bound to RNA

GNPDA1 RNA is bound by 9 proteins.

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eCLIP assay for GNPDA1 is not avaliable on ENCORE database.

9 proteins are bound to GNPDA1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	141380896	141380964	-	3'-UTR,intron-Distal	6.83532	63.00496	K562	LIN28B
chr5	141380454	141380587	-	3'-UTR,intron-Distal	4.88861	17.08773	K562	UPF1
chr5	141380891	141380976	-	3'-UTR,intron-Distal	6.46013	14.47018	HepG2	LIN28B
chr5	141392498	141392591	-	5'-UTR,intron-Distal,intron-Proximal	4.94339	12.77088	HepG2	PRPF8
chr5	141380344	141380454	-	3'-UTR,intron-Distal	5.00679	11.97213	K562	UPF1
chr5	141380273	141380351	-	3'-UTR,intron-Distal	5.88684	10.21115	HepG2	SUB1
chr5	141380964	141380978	-	3'-UTR,intron-Distal	5.39866	9.55253	K562	LIN28B
chr5	141391528	141391583	-	CDS,intron-Distal	3.76558	9.26008	K562	YBX3
chr5	141391512	141391608	-	3'-UTR,5'-UTR,CDS,intron-Distal,intron-Proximal	3.33235	8.86075	K562	DDX3X
chr5	141381140	141381221	-	3'-UTR,intron-Distal,intron-Proximal	3.90925	8.69423	K562	PUM2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 20 entries

eCLIP assay for GNPDA1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GNPDA1 is not available on ENCORE database.
115 RBPs can affect the levels of GNPDA1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GNPDA1 is not available on ENCORE database.

115 RBPs can affect the gene expression of GNPDA1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GNPDA1	ENSG00000113552.11	414.75630	996.30180	-1.26430	31.19430	29.04540	HepG2	EIF4G1
GNPDA1	ENSG00000113552.11	3824.34890	1162.29040	1.71810	27.31430	26.02020	HepG2	RBM22
GNPDA1	ENSG00000113552.11	1445.88070	743.43050	0.95960	25.06270	23.95100	HepG2	SRSF1
GNPDA1	ENSG00000113552.11	2216.84390	865.60830	1.35660	23.26960	21.89420	HepG2	AKAP1
GNPDA1	ENSG00000113552.11	1050.53910	527.18940	0.99460	23.04850	21.56840	HepG2	UTP3
GNPDA1	ENSG00000113552.11	1363.64310	572.87370	1.25110	22.94440	21.39710	K562	PUS1
GNPDA1	ENSG00000113552.11	274.14080	607.92300	-1.14900	21.92220	20.44830	HepG2	CKAP4
GNPDA1	ENSG00000113552.11	633.63620	1139.82820	-0.84710	18.75540	17.67410	HepG2	SSB
GNPDA1	ENSG00000113552.11	2052.76210	1312.77880	0.64480	17.16800	16.19950	HepG2	SRFBP1
GNPDA1	ENSG00000113552.11	267.10500	673.44790	-1.33420	17.15780	15.77960	HepG2	HNRNPLL
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 129 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GNPDA1 is not available on ENCORE database.

17 RBPs can affect the splicing of GNPDA1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	GNPDA1	ENSG00000113552.11	chr5	-	141387363	141387465	141385708	141385891	141391476	141391606	-0.26500	0.00000	0.00000	excluded	K562	SF3B4
SE	GNPDA1	ENSG00000113552.11	chr5	-	141387363	141387465	141385708	141385891	141391476	141391606	-0.13300	0.00000	0.00002	excluded	K562	PUS1
SE	GNPDA1	ENSG00000113552.11	chr5	-	141387363	141387465	141385708	141385891	141391476	141391606	-0.19400	0.00000	0.00001	excluded	K562	U2AF1
SE	GNPDA1	ENSG00000113552.11	chr5	-	141387363	141387465	141385600	141385891	141391476	141391606	-0.14600	0.00000	0.00021	excluded	K562	UTP18
SE	GNPDA1	ENSG00000113552.11	chr5	-	141387363	141387465	141385708	141385891	141391476	141391606	-0.16900	0.00000	0.00015	excluded	K562	U2AF2
SE	GNPDA1	ENSG00000113552.11	chr5	-	141387363	141387465	141385600	141385891	141391476	141391606	-0.16100	0.00000	0.00026	excluded	K562	RBM15
SE	GNPDA1	ENSG00000113552.11	chr5	-	141387363	141387465	141385708	141385891	141391476	141391606	-0.13100	0.00000	0.00028	excluded	K562	AGGF1
A3SS	GNPDA1	ENSG00000113552.11	chr5	-	141382652	141382876	141382652	141382827	141384496	141384681	0.14200	0.00000	0.00000	longer	K562	AQR
A3SS	GNPDA1	ENSG00000113552.11	chr5	-	141387363	141387509	141387363	141387465	141391476	141391606	0.10600	0.00000	0.00000	longer	K562	AQR
SE	GNPDA1	ENSG00000113552.11	chr5	-	141387363	141387465	141385708	141385891	141391476	141391606	-0.12500	0.00001	0.00045	excluded	K562	AKAP8L

Showing 1 to 10 of 24 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GNPDA1

General Information

Functions

Localization

Domains (AlphaFold: GNPDA1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GNPDA1 is not avaliable on ENCORE database.

9 proteins are bound to GNPDA1 RNA:

eCLIP assay for GNPDA1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GNPDA1 is not available on ENCORE database.

115 RBPs can affect the gene expression of GNPDA1 :

The Knockdown/knockout RNA-Seq assay for GNPDA1 is not available on ENCORE database.

17 RBPs can affect the splicing of GNPDA1 :

The Knockdown/knockout RNA-Seq assay for GNPDA1 is not avaliable on ENCORE database.