FAM178B

General Information

Gene Name : FAM178B
Gene ID : ENSG00000168754.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: FAM178B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	FAM178B	ENSG00000168754.14	0.00	0.02	0.01	ENCSR000AEF
HepG2	FAM178B	ENSG00000168754.14	0.00	0.03	0.01	ENCSR985KAT
K562	FAM178B	ENSG00000168754.14	191.31	117.67	154.49	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for FAM178B is not avaliable on ENCORE database.

Proteins bound to RNA

FAM178B RNA is bound by 80 proteins.

CanvasJS.com

eCLIP assay for FAM178B is not avaliable on ENCORE database.

80 proteins are bound to FAM178B RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	97541654	97541733	-	3'-UTR,intron-Distal,intron-Proximal	4.36351	400.00000	K562	PCBP1
chr2	97541733	97541789	-	3'-UTR,intron-Distal,intron-Proximal	4.48528	400.00000	K562	PCBP1
chr2	97541789	97541853	-	3'-UTR,intron-Distal	3.94090	400.00000	K562	PCBP1
chr2	97544155	97544187	-	CDS,intron-Distal	4.92895	400.00000	K562	SND1
chr2	97543763	97543776	-	CDS,intron-Distal	4.32700	400.00000	K562	SND1
chr2	97543700	97543765	-	CDS,intron-Distal	4.82726	400.00000	K562	RPS3
chr2	97544187	97544226	-	CDS,intron-Distal	5.22574	400.00000	K562	SND1
chr2	97560272	97560312	-	intron-Distal	7.20491	400.00000	K562	FASTKD2
chr2	97560003	97560012	-	intron-Distal	7.20846	400.00000	K562	CSTF2T
chr2	97560036	97560063	-	intron-Distal	6.70255	400.00000	K562	DDX24
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 646 entries

eCLIP assay for FAM178B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for FAM178B is not available on ENCORE database.
82 RBPs can affect the levels of FAM178B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for FAM178B is not available on ENCORE database.

82 RBPs can affect the gene expression of FAM178B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
FAM178B	ENSG00000168754.9	963.63870	6575.31520	-2.77050	274.94940	270.57880	K562	FXR1
FAM178B	ENSG00000168754.9	211.80800	1329.25340	-2.64980	94.30120	90.41760	K562	U2AF2
FAM178B	ENSG00000168754.9	152.59230	1328.22880	-3.12180	64.19430	60.14660	K562	G3BP2
FAM178B	ENSG00000168754.9	10689.11620	6375.21150	0.74550	36.23540	34.05010	K562	NSUN2
FAM178B	ENSG00000168754.9	3012.81620	9312.60310	-1.62810	28.90200	26.26530	K562	PUF60
FAM178B	ENSG00000168754.9	6502.55780	4083.36270	0.67110	26.86210	24.05280	K562	BCLAF1
FAM178B	ENSG00000168754.9	8226.07410	2923.85880	1.49220	26.01600	23.07070	K562	FIP1L1
FAM178B	ENSG00000168754.9	5338.91470	3097.83900	0.78520	25.56010	22.23670	K562	CSTF2
FAM178B	ENSG00000168754.9	3269.31130	6322.69710	-0.95160	22.88720	20.26440	K562	EIF4A3
FAM178B	ENSG00000168754.9	591.93530	2664.34940	-2.17030	20.75780	19.00890	K562	PTBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 82 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for FAM178B is not available on ENCORE database.

23 RBPs can affect the splicing of FAM178B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	FAM178B	ENSG00000168754.9	chr2	-	97543626	97543779			97541619	97542045	97544152	97544230	-0.12700	0.00000	excluded	K562	SRSF1
SE	FAM178B	ENSG00000168754.9	chr2	-	97544152	97544230			97543626	97543779	97559662	97559788	-0.05300	0.00008	excluded	K562	PRPF8
SE	FAM178B	ENSG00000168754.9	chr2	-	97544152	97544210			97543626	97543779	97559662	97559788	-0.07400	0.00000	excluded	K562	FXR1
SE	FAM178B	ENSG00000168754.9	chr2	-	97544152	97544230			97541762	97542045	97559662	97559788	-0.12100	0.00000	excluded	K562	EFTUD2
MXE	FAM178B	ENSG00000168754.9	chr2	-	97559662	97559788	97586901	97586999	97544152	97544230	97587214	97587391	0.05100	0.00419	1included	K562	NSUN2
MXE	FAM178B	ENSG00000168754.9	chr2	-	97559662	97559788	97586901	97586999	97543626	97543779	97587214	97587391	-0.22100	0.00026	2included	K562	HNRNPL
MXE	FAM178B	ENSG00000168754.9	chr2	-	97544152	97544230	97559662	97559788	97543626	97543779	97560797	97560879	-0.14000	0.00000	2included	K562	TARDBP
MXE	FAM178B	ENSG00000168754.9	chr2	-	97568356	97568444	97586901	97586999	97559662	97559788	97587214	97587391	0.30000	0.00023	1included	K562	LARP7
MXE	FAM178B	ENSG00000168754.9	chr2	-	97544152	97544230	97559662	97559788	97541619	97542045	97568356	97568444	0.30700	0.00003	1included	K562	ZC3H8
MXE	FAM178B	ENSG00000168754.9	chr2	-	97559662	97559788	97586901	97586999	97544152	97544230	97587214	97587391	0.07600	0.00000	1included	K562	HNRNPC

Showing 1 to 10 of 31 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

FAM178B

General Information

Functions

Localization

Domains (AlphaFold: FAM178B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for FAM178B is not avaliable on ENCORE database.

80 proteins are bound to FAM178B RNA:

eCLIP assay for FAM178B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for FAM178B is not available on ENCORE database.

82 RBPs can affect the gene expression of FAM178B :

The Knockdown/knockout RNA-Seq assay for FAM178B is not available on ENCORE database.

23 RBPs can affect the splicing of FAM178B :

The Knockdown/knockout RNA-Seq assay for FAM178B is not avaliable on ENCORE database.