CEP250

General Information

Gene Name : CEP250
Gene ID : ENSG00000126001.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CEP250)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CEP250	ENSG00000126001.15	6.09	16.29	11.19	ENCSR000AEF
HepG2	CEP250	ENSG00000126001.15	43.77	47.63	45.70	ENCSR985KAT
K562	CEP250	ENSG00000126001.15	12.45	11.37	11.91	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CEP250 is not avaliable on ENCORE database.

Proteins bound to RNA

CEP250 RNA is bound by 28 proteins.

CanvasJS.com

eCLIP assay for CEP250 is not avaliable on ENCORE database.

28 proteins are bound to CEP250 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr20	34055391	34055419	+	intron-Proximal	6.69255	20.26131	K562	AQR
chr20	34053943	34054023	+	CDS	3.88548	20.11890	HepG2	PPIG
chr20	34063380	34063470	+	CDS,intron-Distal	4.05101	19.11814	HepG2	GRWD1
chr20	34090436	34090534	+	3'-UTR,CDS	6.06872	17.03520	K562	UCHL5
chr20	34091087	34091196	+	CDS	4.69180	16.09246	HepG2	FXR2
chr20	34055377	34055391	+	CDS,intron-Proximal	5.58306	15.88168	K562	AQR
chr20	34063393	34063470	+	CDS,intron-Distal	3.61283	15.26030	HepG2	BCLAF1
chr20	34055333	34055381	+	CDS,intron-Proximal	3.97945	15.19416	HepG2	PPIG
chr20	34060614	34060696	+	CDS,intron-Proximal	3.78662	15.17624	HepG2	PRPF8
chr20	34082273	34082356	+	CDS,intron-Proximal	3.93596	13.64049	HepG2	SF3A3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 162 entries

eCLIP assay for CEP250 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CEP250 is not available on ENCORE database.
127 RBPs can affect the levels of CEP250.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CEP250 is not available on ENCORE database.

127 RBPs can affect the gene expression of CEP250 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CEP250	ENSG00000126001.11	2449.05800	4805.05230	-0.97230	60.87890	58.74140	HepG2	CKAP4
CEP250	ENSG00000126001.11	3958.98890	6548.48580	-0.72600	40.42320	38.96900	HepG2	ZNF622
CEP250	ENSG00000126001.11	3276.08050	5748.54890	-0.81120	38.60580	36.73440	HepG2	UTP3
CEP250	ENSG00000126001.11	2740.19090	4445.15540	-0.69800	29.50040	27.50000	HepG2	DDX19B
CEP250	ENSG00000126001.11	3040.32900	4895.70460	-0.68730	28.55860	26.96500	HepG2	PUS1
CEP250	ENSG00000126001.11	2743.38010	4598.43900	-0.74520	27.65650	26.06940	HepG2	DKC1
CEP250	ENSG00000126001.11	2787.47720	4588.59960	-0.71910	26.05720	23.56550	HepG2	HDGF
CEP250	ENSG00000126001.11	1492.87290	3163.32920	-1.08340	22.99710	21.49570	HepG2	RPS19
CEP250	ENSG00000126001.11	2820.42160	4594.84740	-0.70410	22.12670	20.77910	HepG2	PUM1
CEP250	ENSG00000126001.11	578.78140	1307.44200	-1.17570	20.41570	18.37170	K562	PRPF8
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 139 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CEP250 is not available on ENCORE database.

12 RBPs can affect the splicing of CEP250 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CEP250	ENSG00000126001.11	chr20	+	34095566	34095680	34090733	34092833	34095863	34096019	-0.19300	0.00000	0.00001	excluded	HepG2	U2AF1
SE	CEP250	ENSG00000126001.11	chr20	+	34084405	34084544	34082350	34082484	34085547	34085896	-0.21200	0.00000	0.00000	excluded	HepG2	U2AF1
SE	CEP250	ENSG00000126001.11	chr20	+	34087877	34087998	34086423	34086545	34089671	34089793	-0.18000	0.00000	0.00012	excluded	HepG2	DDX3X
SE	CEP250	ENSG00000126001.11	chr20	+	34087877	34087998	34086423	34086545	34089671	34089793	-0.19700	0.00000	0.00032	excluded	HepG2	IGF2BP3
A3SS	CEP250	ENSG00000126001.11	chr20	+	34055128	34055380	34055213	34055380	34054790	34054897	-0.25500	0.00000	0.00005	shorter	HepG2	U2AF2
SE	CEP250	ENSG00000126001.11	chr20	+	34057714	34057811	34055128	34055380	34059874	34059976	-0.08700	0.00001	0.00016	excluded	HepG2	U2AF2
SE	CEP250	ENSG00000126001.11	chr20	+	34087877	34087998	34086423	34086545	34089671	34089793	-0.13600	0.00002	0.00235	excluded	HepG2	NCBP2
SE	CEP250	ENSG00000126001.11	chr20	+	34078462	34078630	34067800	34067970	34079037	34079172	-0.33000	0.00004	0.00154	excluded	K562	SRSF1
SE	CEP250	ENSG00000126001.11	chr20	+	34087877	34087998	34086423	34086545	34089671	34089793	-0.17900	0.00004	0.00306	excluded	HepG2	HNRNPU
SE	CEP250	ENSG00000126001.11	chr20	+	34087877	34087998	34086423	34086545	34089671	34089793	-0.11500	0.00015	0.00979	excluded	HepG2	MATR3

Showing 1 to 10 of 19 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CEP250

General Information

Functions

Localization

Domains (AlphaFold: CEP250)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CEP250 is not avaliable on ENCORE database.

28 proteins are bound to CEP250 RNA:

eCLIP assay for CEP250 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CEP250 is not available on ENCORE database.

127 RBPs can affect the gene expression of CEP250 :

The Knockdown/knockout RNA-Seq assay for CEP250 is not available on ENCORE database.

12 RBPs can affect the splicing of CEP250 :

The Knockdown/knockout RNA-Seq assay for CEP250 is not avaliable on ENCORE database.