CDCA3

General Information

Gene Name : CDCA3
Gene ID : ENSG00000111665.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CDCA3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CDCA3	ENSG00000111665.11	64.88	76.76	70.82	ENCSR000AEF
HepG2	CDCA3	ENSG00000111665.11	65.78	48.63	57.20	ENCSR985KAT
K562	CDCA3	ENSG00000111665.11	62.35	54.37	58.36	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CDCA3 is not avaliable on ENCORE database.

Proteins bound to RNA

CDCA3 RNA is bound by 12 proteins.

CanvasJS.com

eCLIP assay for CDCA3 is not avaliable on ENCORE database.

12 proteins are bound to CDCA3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr12	6958989	6959077	-	CDS,intron-Distal,intron-Proximal	4.97029	12.02813	K562	SF3B4
chr12	6959583	6959632	-	CDS,intron-Distal,intron-Proximal	5.68137	8.83608	K562	AQR
chr12	6958643	6958730	-	CDS,intron-Distal,intron-Proximal	3.92110	8.67867	K562	AQR
chr12	6958848	6958937	-	CDS,intron-Distal	5.17374	8.10821	K562	RPS3
chr12	6958234	6958347	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.09150	7.50845	HepG2	GRWD1
chr12	6959723	6959780	-	CDS,intron-Distal,intron-Proximal	3.45511	6.51619	K562	AQR
chr12	6958069	6958166	-	3'-UTR,intron-Distal,intron-Proximal	3.89638	6.14390	K562	PABPC4
chr12	6958170	6958227	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.28014	5.58962	K562	RBM15
chr12	6958695	6958752	-	CDS,intron-Distal,intron-Proximal	4.01595	5.28701	K562	PRPF8
chr12	6959528	6959602	-	intron-Distal,intron-Proximal	3.70487	4.83721	K562	EFTUD2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 20 entries

eCLIP assay for CDCA3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CDCA3 is not available on ENCORE database.
142 RBPs can affect the levels of CDCA3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CDCA3 is not available on ENCORE database.

142 RBPs can affect the gene expression of CDCA3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CDCA3	ENSG00000111665.7	136.49770	849.62520	-2.63800	90.42460	88.59580	HepG2	SRFBP1
CDCA3	ENSG00000111665.7	74.64650	575.33880	-2.94630	83.96100	82.05820	HepG2	ZNF622
CDCA3	ENSG00000111665.7	96.86480	752.22690	-2.95710	82.61660	80.56750	HepG2	RBM22
CDCA3	ENSG00000111665.7	54.55210	551.79020	-3.33840	59.72810	57.44150	HepG2	SUPV3L1
CDCA3	ENSG00000111665.7	155.47700	645.47650	-2.05370	56.75240	54.66950	HepG2	CKAP4
CDCA3	ENSG00000111665.7	117.20240	592.54210	-2.33790	51.03950	49.39080	HepG2	TIAL1
CDCA3	ENSG00000111665.7	88.25280	524.80270	-2.57210	46.66060	44.68660	HepG2	RPLP0
CDCA3	ENSG00000111665.7	80.69100	452.95000	-2.48890	43.27140	41.37880	HepG2	RPS19
CDCA3	ENSG00000111665.7	50.83080	422.84570	-3.05640	43.06830	40.71980	HepG2	RRP9
CDCA3	ENSG00000111665.7	148.19720	523.12670	-1.81960	36.61160	34.67340	HepG2	UPF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 156 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CDCA3 is not available on ENCORE database.

25 RBPs can affect the splicing of CDCA3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	CDCA3	ENSG00000111665.7	chr12	-	6958486	6958593	6957979	6958362	6958728	6958947	-0.24600	0.00015	excluded	K562	SF3B4
SE	CDCA3	ENSG00000111665.7	chr12	-	6958486	6958593	6957979	6958362	6958728	6958947	-0.28300	0.00000	excluded	K562	PRPF8
SE	CDCA3	ENSG00000111665.7	chr12	-	6958486	6958593	6957972	6958362	6958728	6959022	-0.43900	0.00000	excluded	K562	AQR
SE	CDCA3	ENSG00000111665.7	chr12	-	6958486	6958593	6957972	6958362	6958728	6959022	-0.13200	0.00001	excluded	K562	HNRNPU
A3SS	CDCA3	ENSG00000111665.7	chr12	-	6959630	6959860	6959630	6959760	6959996	6960173	0.44600	0.00000	longer	K562	AQR
A3SS	CDCA3	ENSG00000111665.7	chr12	-	6959996	6960200	6959996	6960173	6960385	6960456	0.14100	0.00000	longer	K562	AQR
A3SS	CDCA3	ENSG00000111665.7	chr12	-	6958486	6958629	6958486	6958593	6958728	6958828	0.13400	0.00000	longer	K562	AQR
A3SS	CDCA3	ENSG00000111665.7	chr12	-	6959996	6960173	6959996	6960106	6960385	6960433	-0.59000	0.00000	shorter	HepG2	U2AF1
A5SS	CDCA3	ENSG00000111665.7	chr12	-	6958486	6959022	6958728	6959022	6958256	6958362	-0.21600	0.00004	shorter	K562	HNRNPU
RI	CDCA3	ENSG00000111665.7	chr12	-	6959630	6960173	6959630	6959760	6959996	6960173	0.18000	0.00000	included	K562	PUS1

Showing 1 to 10 of 55 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CDCA3

General Information

Functions

Localization

Domains (AlphaFold: CDCA3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CDCA3 is not avaliable on ENCORE database.

12 proteins are bound to CDCA3 RNA:

eCLIP assay for CDCA3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CDCA3 is not available on ENCORE database.

142 RBPs can affect the gene expression of CDCA3 :

The Knockdown/knockout RNA-Seq assay for CDCA3 is not available on ENCORE database.

25 RBPs can affect the splicing of CDCA3 :

The Knockdown/knockout RNA-Seq assay for CDCA3 is not avaliable on ENCORE database.