CAPN12

General Information

Gene Name : CAPN12
Gene ID : ENSG00000182472.8
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CAPN12)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CAPN12	ENSG00000182472.8	1.96	1.84	1.90	ENCSR000AEF
HepG2	CAPN12	ENSG00000182472.8	3.01	2.01	2.51	ENCSR985KAT
K562	CAPN12	ENSG00000182472.8	3.37	2.26	2.81	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CAPN12 is not avaliable on ENCORE database.

Proteins bound to RNA

CAPN12 RNA is bound by 10 proteins.

CanvasJS.com

eCLIP assay for CAPN12 is not avaliable on ENCORE database.

10 proteins are bound to CAPN12 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	39227287	39227380	-	intron-Distal,intron-Proximal	6.61887	20.18297	HepG2	PRPF4
chr19	39227448	39227533	-	intron-Distal	4.58148	16.34668	HepG2	PRPF4
chr19	39220973	39221076	-	3'-UTR,intron-Distal,intron-Proximal	4.12025	14.79588	HepG2	PABPN1
chr19	39221746	39221837	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.89442	13.61101	HepG2	PABPN1
chr19	39221415	39221518	-	3'-UTR,CDS,intron-Distal,intron-Proximal	5.06846	13.26805	HepG2	LSM11
chr19	39221380	39221411	-	3'-UTR,intron-Distal	4.62921	12.40008	HepG2	PABPN1
chr19	39226008	39226094	-	CDS,intron-Distal,intron-Proximal	4.44584	12.18291	HepG2	PPIG
chr19	39227393	39227448	-	intron-Distal	5.79087	11.85679	HepG2	PRPF4
chr19	39226242	39226308	-	intron-Distal,intron-Proximal	4.54295	10.72552	HepG2	DDX59
chr19	39233847	39233953	-	intron-Distal,intron-Proximal	4.52507	10.60129	HepG2	PRPF4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 45 entries

eCLIP assay for CAPN12 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CAPN12 is not available on ENCORE database.
130 RBPs can affect the levels of CAPN12.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CAPN12 is not available on ENCORE database.

130 RBPs can affect the gene expression of CAPN12 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CAPN12	ENSG00000182472.4	946.86240	296.74270	1.67380	58.38850	55.91140	HepG2	DAZAP1
CAPN12	ENSG00000182472.4	346.74790	51.53600	2.75010	40.21010	37.96910	HepG2	IGF2BP1
CAPN12	ENSG00000182472.4	384.26360	50.57530	2.92550	39.31800	37.37640	HepG2	HNRNPLL
CAPN12	ENSG00000182472.4	117.18560	492.52270	-2.07140	38.25910	36.40720	HepG2	UTP3
CAPN12	ENSG00000182472.4	355.24960	50.94930	2.80160	38.03650	36.27910	HepG2	BOP1
CAPN12	ENSG00000182472.4	299.17640	51.43050	2.54020	34.74250	32.84160	HepG2	SRSF7
CAPN12	ENSG00000182472.4	617.58790	117.83250	2.38980	33.03120	31.19230	HepG2	SUPV3L1
CAPN12	ENSG00000182472.4	62.27220	453.24250	-2.86360	31.60010	30.38350	HepG2	SRSF1
CAPN12	ENSG00000182472.4	289.31250	52.33880	2.46660	32.24270	30.24810	HepG2	HNRNPF
CAPN12	ENSG00000182472.4	97.31920	385.47400	-1.98580	30.95870	29.44890	HepG2	ACO1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 141 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CAPN12 is not available on ENCORE database.

5 RBPs can affect the splicing of CAPN12 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	CAPN12	ENSG00000182472.4	chr19	-	39224958	39225510	39224958	39225029	39225452	39225510	-0.38300	0.00024	0.01537	excluded	HepG2	HNRNPC
RI	CAPN12	ENSG00000182472.4	chr19	-	39224958	39225510	39224958	39225029	39225452	39225510	0.39500	0.00039	0.00422	included	HepG2	SF3B4
A3SS	CAPN12	ENSG00000182472.4	chr19	-	39224958	39225176	39224958	39225029	39225452	39225510	0.37500	0.00118	0.07639	longer	HepG2	SF3B4
RI	CAPN12	ENSG00000182472.4	chr19	-	39226009	39226184	39226009	39226069	39226141	39226184	0.51300	0.00301	0.05422	included	HepG2	KHSRP
RI	CAPN12	ENSG00000182472.4	chr19	-	39224958	39225510	39224958	39225029	39225452	39225510	-0.23300	0.00575	0.07623	excluded	HepG2	FUBP3
RI	CAPN12	ENSG00000182472.4	chr19	-	39224958	39225510	39224958	39225029	39225452	39225510	-0.48600	0.00718	0.08817	excluded	K562	FXR1

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CAPN12

General Information

Functions

Localization

Domains (AlphaFold: CAPN12)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CAPN12 is not avaliable on ENCORE database.

10 proteins are bound to CAPN12 RNA:

eCLIP assay for CAPN12 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CAPN12 is not available on ENCORE database.

130 RBPs can affect the gene expression of CAPN12 :

The Knockdown/knockout RNA-Seq assay for CAPN12 is not available on ENCORE database.

5 RBPs can affect the splicing of CAPN12 :

The Knockdown/knockout RNA-Seq assay for CAPN12 is not avaliable on ENCORE database.