BPTF

General Information

Gene Name : BPTF
Gene ID : ENSG00000171634.17
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: BPTF)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	BPTF	ENSG00000171634.17	46.70	49.39	48.05	ENCSR000AEF
HepG2	BPTF	ENSG00000171634.17	53.41	52.44	52.92	ENCSR985KAT
K562	BPTF	ENSG00000171634.17	28.43	30.75	29.59	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for BPTF is not avaliable on ENCORE database.

Proteins bound to RNA

BPTF RNA is bound by 40 proteins.

CanvasJS.com

eCLIP assay for BPTF is not avaliable on ENCORE database.

40 proteins are bound to BPTF RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr17	65907266	65907375	+	CDS	4.66669	34.94329	HepG2	BCLAF1
chr17	65955705	65955842	+	CDS	5.51340	31.41619	HepG2	PCBP2
chr17	65871093	65871139	+	CDS,intron-Proximal	6.98217	30.86068	HepG2	BCLAF1
chr17	65909113	65909223	+	CDS	4.26045	30.69105	HepG2	BCLAF1
chr17	65871014	65871080	+	CDS	6.01287	27.62668	HepG2	BCLAF1
chr17	65889484	65889550	+	CDS,intron-Proximal	5.76303	24.37567	HepG2	BCLAF1
chr17	65908690	65908778	+	CDS	4.28218	23.90469	HepG2	BCLAF1
chr17	65908118	65908199	+	CDS	5.24216	23.70298	HepG2	BCLAF1
chr17	65941917	65941992	+	CDS	4.60991	21.25595	HepG2	IGF2BP1
chr17	65960489	65960558	+	CDS,intron-Proximal	4.64045	20.76756	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 301 entries

eCLIP assay for BPTF is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for BPTF is not available on ENCORE database.
89 RBPs can affect the levels of BPTF.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for BPTF is not available on ENCORE database.

89 RBPs can affect the gene expression of BPTF :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
BPTF	ENSG00000171634.12	5224.56250	3356.61450	0.63820	24.35560	23.25660	HepG2	SRSF1
BPTF	ENSG00000171634.12	3498.02350	6585.52350	-0.91280	20.85310	19.44360	HepG2	BOP1
BPTF	ENSG00000171634.12	918.63910	1869.85540	-1.02540	16.47040	14.64940	HepG2	UCHL5
BPTF	ENSG00000171634.12	4582.14670	3017.20940	0.60270	15.33600	14.17470	HepG2	TAF15
BPTF	ENSG00000171634.12	2756.24670	3883.95290	-0.49480	14.40380	13.19060	HepG2	PUS1
BPTF	ENSG00000171634.12	2565.66100	4570.24300	-0.83290	15.60340	13.15090	K562	PPIG
BPTF	ENSG00000171634.12	2393.71440	3333.40590	-0.47770	14.51320	13.13630	HepG2	DNAJC2
BPTF	ENSG00000171634.12	2592.42360	3678.01390	-0.50460	13.26770	12.16470	HepG2	TRIM56
BPTF	ENSG00000171634.12	4813.49180	3437.53690	0.48560	12.71960	11.71600	HepG2	NELFE
BPTF	ENSG00000171634.12	3261.33180	5458.76660	-0.74310	13.40730	11.70140	K562	HSPD1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 94 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for BPTF is not available on ENCORE database.

41 RBPs can affect the splicing of BPTF :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	BPTF	ENSG00000171634.12	chr17	+	65925074	65925236	65924470	65924717	65925451	65925603	0.39400	0.00000	included	K562	SRSF1
SE	BPTF	ENSG00000171634.12	chr17	+	65871671	65871860	65870932	65871136	65882243	65882432	-0.34600	0.00061	excluded	HepG2	RBM22
SE	BPTF	ENSG00000171634.12	chr17	+	65920662	65920705	65918955	65919106	65924470	65924717	-0.21000	0.00000	excluded	HepG2	U2AF1
SE	BPTF	ENSG00000171634.12	chr17	+	65920662	65920705	65918955	65919106	65924470	65924717	-0.27000	0.00000	excluded	HepG2	U2AF2
SE	BPTF	ENSG00000171634.12	chr17	+	65871671	65871860	65870932	65871136	65882243	65882432	-0.40200	0.00005	excluded	K562	FXR1
SE	BPTF	ENSG00000171634.12	chr17	+	65925074	65925236	65924470	65924717	65925451	65925603	0.27900	0.00000	included	HepG2	SRSF7
SE	BPTF	ENSG00000171634.12	chr17	+	65871671	65871860	65870932	65871136	65882243	65882432	-0.29900	0.00001	excluded	K562	APOBEC3C
SE	BPTF	ENSG00000171634.12	chr17	+	65925074	65925236	65924470	65924717	65925451	65925603	0.57100	0.00000	included	HepG2	HNRNPL
SE	BPTF	ENSG00000171634.12	chr17	+	65925074	65925236	65924470	65924717	65925451	65925603	0.58700	0.00000	included	K562	HNRNPL
SE	BPTF	ENSG00000171634.12	chr17	+	65925074	65925236	65924470	65924717	65925451	65925603	0.38800	0.00000	included	HepG2	SRSF1

Showing 1 to 10 of 78 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

BPTF

General Information

Functions

Localization

Domains (AlphaFold: BPTF)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for BPTF is not avaliable on ENCORE database.

40 proteins are bound to BPTF RNA:

eCLIP assay for BPTF is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for BPTF is not available on ENCORE database.

89 RBPs can affect the gene expression of BPTF :

The Knockdown/knockout RNA-Seq assay for BPTF is not available on ENCORE database.

41 RBPs can affect the splicing of BPTF :

The Knockdown/knockout RNA-Seq assay for BPTF is not avaliable on ENCORE database.