BFAR

General Information

Gene Name : BFAR
Gene ID : ENSG00000103429.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: BFAR)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	BFAR	ENSG00000103429.10	48.38	42.17	45.28	ENCSR000AEF
HepG2	BFAR	ENSG00000103429.10	55.42	96.53	75.97	ENCSR985KAT
K562	BFAR	ENSG00000103429.10	59.83	55.58	57.70	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for BFAR is not avaliable on ENCORE database.

Proteins bound to RNA

BFAR RNA is bound by 8 proteins.

CanvasJS.com

eCLIP assay for BFAR is not avaliable on ENCORE database.

8 proteins are bound to BFAR RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	14761928	14762085	+	3'-UTR,intron-Distal	5.03969	16.58787	HepG2	UPF1
chr16	14726786	14726877	+	5'-UTR,intron-Proximal	4.57295	13.05315	K562	DDX3X
chr16	14762568	14762670	+	3'-UTR,intron-Distal	4.79697	12.76496	HepG2	UPF1
chr16	14726869	14726922	+	5'-UTR,intron-Proximal	3.89604	10.32997	HepG2	PRPF8
chr16	14726795	14726843	+	5'-UTR	4.87053	9.60311	HepG2	DDX3X
chr16	14762417	14762506	+	3'-UTR,intron-Distal	5.15821	7.98718	HepG2	UPF1
chr16	14726783	14726884	+	5'-UTR,intron-Proximal	3.48714	7.87625	HepG2	NCBP2
chr16	14762137	14762231	+	3'-UTR,intron-Distal	4.92185	7.69327	HepG2	UPF1
chr16	14755876	14755965	+	3'-UTR,CDS,intron-Proximal	3.60196	6.74268	HepG2	PRPF8
chr16	14762141	14762250	+	3'-UTR,intron-Distal	5.37685	6.64872	K562	UPF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 19 entries

eCLIP assay for BFAR is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for BFAR is not available on ENCORE database.
100 RBPs can affect the levels of BFAR.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for BFAR is not available on ENCORE database.

100 RBPs can affect the gene expression of BFAR :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
BFAR	ENSG00000103429.6	2517.63400	4526.73930	-0.84640	35.08640	33.62110	HepG2	NELFE
BFAR	ENSG00000103429.6	1528.63410	2646.38850	-0.79180	33.93500	32.10620	HepG2	SMN1
BFAR	ENSG00000103429.6	1471.50260	3921.82980	-1.41420	32.65680	30.26240	HepG2	PABPC4
BFAR	ENSG00000103429.6	1190.74480	2476.06850	-1.05620	30.10700	28.78300	HepG2	TIAL1
BFAR	ENSG00000103429.6	2460.76480	4067.39930	-0.72500	25.56960	24.22830	HepG2	PTBP1
BFAR	ENSG00000103429.6	1649.82440	3967.29760	-1.26580	25.38210	23.43840	HepG2	G3BP1
BFAR	ENSG00000103429.6	1647.65460	3239.68870	-0.97540	24.94480	22.24480	HepG2	TUFM
BFAR	ENSG00000103429.6	986.17930	2116.13210	-1.10150	22.49100	20.70220	HepG2	SF3B1
BFAR	ENSG00000103429.6	2938.51810	4420.25400	-0.58900	20.24730	19.21600	HepG2	SRSF1
BFAR	ENSG00000103429.6	2279.09770	3544.38820	-0.63710	20.27590	19.16500	HepG2	SSB
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 114 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for BFAR is not available on ENCORE database.

12 RBPs can affect the splicing of BFAR :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	BFAR	ENSG00000103429.6	chr16	+	14748922	14749067	14738130	14738466	14755748	14755922	-0.07700	0.00000	0.00000	excluded	HepG2	U2AF1
SE	BFAR	ENSG00000103429.6	chr16	+	14748922	14749067	14738130	14738466	14755748	14755922	-0.06200	0.00000	0.00000	excluded	HepG2	FTO
A3SS	BFAR	ENSG00000103429.6	chr16	+	14743640	14743830	14743660	14743830	14742244	14742449	0.07400	0.00004	0.00040	longer	K562	AQR
SE	BFAR	ENSG00000103429.6	chr16	+	14743660	14743830	14742244	14742449	14755748	14755922	-0.47900	0.00006	0.00451	excluded	K562	SF3B1
SE	BFAR	ENSG00000103429.6	chr16	+	14742244	14742449	14738130	14738466	14743660	14743830	-0.05700	0.00010	0.01771	excluded	HepG2	SSB
SE	BFAR	ENSG00000103429.6	chr16	+	14743660	14743830	14742244	14742449	14748922	14749067	-0.09300	0.00017	0.05785	excluded	HepG2	DROSHA
SE	BFAR	ENSG00000103429.6	chr16	+	14743660	14743830	14738144	14738466	14748922	14749067	-0.08600	0.00040	0.07416	excluded	K562	SBDS
SE	BFAR	ENSG00000103429.6	chr16	+	14743660	14743830	14738144	14738466	14748922	14749067	-0.06400	0.00050	0.00779	excluded	HepG2	U2AF2
A3SS	BFAR	ENSG00000103429.6	chr16	+	14761470	14761694	14761491	14761694	14758725	14758928	0.05200	0.00057	0.00422	longer	K562	AQR
SE	BFAR	ENSG00000103429.6	chr16	+	14743660	14743830	14742244	14742449	14748922	14749067	-0.07700	0.00076	0.00967	excluded	K562	AQR

Showing 1 to 10 of 15 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

BFAR

General Information

Functions

Localization

Domains (AlphaFold: BFAR)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for BFAR is not avaliable on ENCORE database.

8 proteins are bound to BFAR RNA:

eCLIP assay for BFAR is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for BFAR is not available on ENCORE database.

100 RBPs can affect the gene expression of BFAR :

The Knockdown/knockout RNA-Seq assay for BFAR is not available on ENCORE database.

12 RBPs can affect the splicing of BFAR :

The Knockdown/knockout RNA-Seq assay for BFAR is not avaliable on ENCORE database.