ATM

General Information

Gene Name : ATM
Gene ID : ENSG00000149311.18
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ATM)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ATM	ENSG00000149311.18	44.56	30.63	37.59	ENCSR000AEF
HepG2	ATM	ENSG00000149311.18	21.47	34.81	28.14	ENCSR985KAT
K562	ATM	ENSG00000149311.18	12.12	15.48	13.80	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ATM is not avaliable on ENCORE database.

Proteins bound to RNA

ATM RNA is bound by 25 proteins.

CanvasJS.com

eCLIP assay for ATM is not avaliable on ENCORE database.

25 proteins are bound to ATM RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	108137954	108138004	+	CDS	6.03521	43.57224	HepG2	BCLAF1
chr11	108138004	108138065	+	CDS	5.70633	36.33993	HepG2	BCLAF1
chr11	108139180	108139272	+	CDS	4.98146	34.56878	HepG2	BCLAF1
chr11	108121456	108121552	+	CDS	4.13764	29.89767	HepG2	BCLAF1
chr11	108137906	108137947	+	CDS	4.99787	27.99426	HepG2	BCLAF1
chr11	108099906	108099964	+	CDS	4.13808	27.69101	HepG2	BCLAF1
chr11	108128207	108128259	+	CDS,intron-Proximal	5.48463	27.36793	HepG2	BCLAF1
chr11	108173672	108173747	+	CDS	4.69886	24.95421	HepG2	BCLAF1
chr11	108124595	108124651	+	CDS	4.59240	24.33549	HepG2	BCLAF1
chr11	108121426	108121456	+	CDS,intron-Proximal	4.46443	23.30628	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 221 entries

eCLIP assay for ATM is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ATM is not available on ENCORE database.
119 RBPs can affect the levels of ATM.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ATM is not available on ENCORE database.

119 RBPs can affect the gene expression of ATM :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ATM	ENSG00000149311.13	960.73270	2092.82720	-1.12320	41.33570	39.19070	K562	AGGF1
ATM	ENSG00000149311.13	2050.50370	920.67490	1.15510	31.37760	28.98300	K562	POLR2G
ATM	ENSG00000149311.13	2426.04430	1371.76160	0.82250	27.79360	25.82520	K562	UPF1
ATM	ENSG00000149311.13	2254.62940	1307.98020	0.78540	27.44510	25.06050	K562	SRPK2
ATM	ENSG00000149311.13	1991.94170	3280.36820	-0.71970	25.27940	23.74530	HepG2	UTP3
ATM	ENSG00000149311.13	1504.31620	2810.21020	-0.90160	23.66380	22.47010	HepG2	TIAL1
ATM	ENSG00000149311.13	2308.19760	3598.23130	-0.64050	22.50450	21.05980	HepG2	PUS1
ATM	ENSG00000149311.13	2780.24520	1200.23870	1.21180	20.50810	18.33170	K562	PCBP3
ATM	ENSG00000149311.13	973.57590	2028.16780	-1.05880	19.38550	17.52290	K562	SRSF1
ATM	ENSG00000149311.13	2451.37280	1338.12280	0.87330	17.83270	15.92930	HepG2	FUBP3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 140 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ATM is not available on ENCORE database.

9 RBPs can affect the splicing of ATM :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ATM	ENSG00000149311.13	chr11	+	108158136	108158165	108154953	108155200	108158326	108158441	0.40500	0.00000	0.00000	included	HepG2	U2AF1
SE	ATM	ENSG00000149311.13	chr11	+	108213463	108213672	108206571	108206688	108213948	108214098	0.06900	0.00000	0.00000	included	HepG2	U2AF2
SE	ATM	ENSG00000149311.13	chr11	+	108097112	108097179	108093842	108093913	108098321	108098423	-0.24700	0.00043	0.03611	excluded	K562	HNRNPUL1
SE	ATM	ENSG00000149311.13	chr11	+	108097112	108097179	108093842	108093913	108098321	108098423	-0.20100	0.00073	0.06035	excluded	HepG2	QKI
SE	ATM	ENSG00000149311.13	chr11	+	108219678	108219891	108218005	108218092	108224492	108224607	0.14100	0.00086	0.01507	included	K562	PUS1
SE	ATM	ENSG00000149311.13	chr11	+	108097112	108097179	108093842	108093913	108098321	108098423	-0.27700	0.00089	0.09541	excluded	K562	LARP4
SE	ATM	ENSG00000149311.13	chr11	+	108213463	108213672	108206571	108206688	108213948	108214098	0.06800	0.00143	0.02782	included	HepG2	U2AF1
SE	ATM	ENSG00000149311.13	chr11	+	108097112	108097179	108093811	108093913	108098321	108098423	-0.18400	0.00257	0.05336	excluded	HepG2	SRSF1
SE	ATM	ENSG00000149311.13	chr11	+	108095510	108095598	108093842	108093913	108098321	108098423	0.19800	0.00354	0.09989	included	K562	FXR1
SE	ATM	ENSG00000149311.13	chr11	+	108141790	108141873	108139136	108139336	108141977	108142133	-0.27100	0.00359	0.03541	excluded	K562	AQR

Showing 1 to 10 of 11 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ATM

General Information

Functions

Localization

Domains (AlphaFold: ATM)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ATM is not avaliable on ENCORE database.

25 proteins are bound to ATM RNA:

eCLIP assay for ATM is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ATM is not available on ENCORE database.

119 RBPs can affect the gene expression of ATM :

The Knockdown/knockout RNA-Seq assay for ATM is not available on ENCORE database.

9 RBPs can affect the splicing of ATM :

The Knockdown/knockout RNA-Seq assay for ATM is not avaliable on ENCORE database.