AGAP3

General Information

Gene Name : AGAP3
Gene ID : ENSG00000133612.18
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: AGAP3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	AGAP3	ENSG00000133612.18	4.53	10.88	7.71	ENCSR000AEF
HepG2	AGAP3	ENSG00000133612.18	46.12	17.35	31.73	ENCSR985KAT
K562	AGAP3	ENSG00000133612.18	69.88	44.86	57.37	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for AGAP3 is not avaliable on ENCORE database.

Proteins bound to RNA

AGAP3 RNA is bound by 63 proteins.

CanvasJS.com

eCLIP assay for AGAP3 is not avaliable on ENCORE database.

63 proteins are bound to AGAP3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	150841400	150841462	+	3'-UTR	7.25242	400.00000	K562	PUM2
chr7	150841462	150841510	+	3'-UTR	7.23749	57.10249	K562	PUM2
chr7	150783701	150783820	+	intron-Distal	4.49049	39.87247	K562	GEMIN5
chr7	150784449	150784571	+	intron-Distal	6.29105	35.63632	K562	NONO
chr7	150815542	150815619	+	CDS,intron-Proximal	6.31137	33.04769	K562	SF3B4
chr7	150815405	150815475	+	CDS,intron-Proximal	5.55493	28.63238	HepG2	PRPF8
chr7	150784375	150784464	+	intron-Distal,intron-Proximal	4.21208	27.76596	K562	GEMIN5
chr7	150791901	150792033	+	intron-Distal	5.89810	24.79355	HepG2	PCBP2
chr7	150795472	150795543	+	intron-Distal	5.44305	23.12221	K562	HNRNPL
chr7	150793200	150793353	+	intron-Distal	5.57568	21.65425	K562	NONO
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 443 entries

eCLIP assay for AGAP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for AGAP3 is not available on ENCORE database.
78 RBPs can affect the levels of AGAP3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for AGAP3 is not available on ENCORE database.

78 RBPs can affect the gene expression of AGAP3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
AGAP3	ENSG00000133612.14	500.69440	1314.40370	-1.39240	33.59730	32.34870	HepG2	SRSF1
AGAP3	ENSG00000133612.14	1002.94360	470.64960	1.09140	27.14530	25.60840	HepG2	TRIM56
AGAP3	ENSG00000133612.14	887.52340	427.52230	1.05370	24.45850	22.80470	HepG2	SAFB2
AGAP3	ENSG00000133612.14	782.16560	428.18440	0.86910	14.06190	12.47260	HepG2	PPIL4
AGAP3	ENSG00000133612.14	1304.83310	866.27430	0.59090	13.33100	12.23530	HepG2	PUM1
AGAP3	ENSG00000133612.14	1034.40510	629.95510	0.71540	11.03430	9.42920	K562	EIF3G
AGAP3	ENSG00000133612.14	1309.00350	805.74100	0.70000	10.45070	9.33850	HepG2	SRSF5
AGAP3	ENSG00000133612.14	137.57470	443.90750	-1.69000	10.66920	9.10300	K562	G3BP2
AGAP3	ENSG00000133612.14	1812.95770	930.76750	0.96180	10.40430	8.89020	K562	TARDBP
AGAP3	ENSG00000133612.14	1722.52860	965.62960	0.83490	10.30240	8.61830	K562	MAGOH
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 89 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for AGAP3 is not available on ENCORE database.

16 RBPs can affect the splicing of AGAP3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	AGAP3	ENSG00000133612.14	chr7	+	150837065	150837203			150831511	150831655	150838984	150839139	-0.33900	0.00000	0.00331	excluded	K562	PCBP1
SE	AGAP3	ENSG00000133612.14	chr7	+	150817606	150817832			150817073	150817232	150820880	150820937	0.29000	0.00000	0.00010	included	HepG2	PTBP1
SE	AGAP3	ENSG00000133612.14	chr7	+	150819811	150820008			150817073	150817232	150820880	150820973	0.31200	0.00000	0.00003	included	HepG2	MATR3
SE	AGAP3	ENSG00000133612.14	chr7	+	150837805	150837963			150837065	150837203	150838984	150839139	0.16200	0.00000	0.00003	included	HepG2	MATR3
SE	AGAP3	ENSG00000133612.14	chr7	+	150837065	150837203			150831511	150831655	150838984	150839139	-0.34400	0.00001	0.00145	excluded	HepG2	MATR3
SE	AGAP3	ENSG00000133612.14	chr7	+	150817606	150817832			150817073	150817232	150819811	150819965	-0.33900	0.00001	0.00338	excluded	HepG2	LARP4
SE	AGAP3	ENSG00000133612.14	chr7	+	150837065	150837203			150831511	150831655	150838984	150839139	-0.42900	0.00001	0.00073	excluded	HepG2	PCBP1
MXE	AGAP3	ENSG00000133612.14	chr7	+	150814457	150814543	150814722	150814864	150814181	150814269	150815296	150815431	-0.24900	0.00003	0.00249	2included	K562	UCHL5
SE	AGAP3	ENSG00000133612.14	chr7	+	150837065	150837203			150831511	150831655	150838984	150839139	-0.30000	0.00004	0.00139	excluded	K562	SRSF1
SE	AGAP3	ENSG00000133612.14	chr7	+	150817606	150817832			150817073	150817232	150819811	150819965	0.25100	0.00005	0.00318	included	K562	HNRNPU

Showing 1 to 10 of 21 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

AGAP3

General Information

Functions

Localization

Domains (AlphaFold: AGAP3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for AGAP3 is not avaliable on ENCORE database.

63 proteins are bound to AGAP3 RNA:

eCLIP assay for AGAP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for AGAP3 is not available on ENCORE database.

78 RBPs can affect the gene expression of AGAP3 :

The Knockdown/knockout RNA-Seq assay for AGAP3 is not available on ENCORE database.

16 RBPs can affect the splicing of AGAP3 :

The Knockdown/knockout RNA-Seq assay for AGAP3 is not avaliable on ENCORE database.