AC093838.4

General Information

Gene Name : AC093838.4
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: AC093838.4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for AC093838.4 is not avaliable on ENCORE database.

Proteins bound to RNA

AC093838.4 RNA is bound by 26 proteins.

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eCLIP assay for AC093838.4 is not avaliable on ENCORE database.

26 proteins are bound to AC093838.4 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	132268247	132268338	+	intron-Distal	6.52564	400.00000	HepG2	RBFOX2
chr2	132266485	132266547	+	intron-Distal	7.38683	179.89336	HepG2	RBFOX2
chr2	132266677	132266759	+	intron-Distal	7.94039	117.98677	HepG2	RBFOX2
chr2	132266574	132266657	+	intron-Distal	7.14478	76.04201	HepG2	RBFOX2
chr2	132266759	132266810	+	intron-Distal	7.93677	71.56183	HepG2	RBFOX2
chr2	132266438	132266473	+	intron-Distal	5.39524	43.79382	HepG2	RBFOX2
chr2	132266473	132266485	+	intron-Distal	5.35459	41.28028	HepG2	RBFOX2
chr2	132268258	132268335	+	intron-Distal	6.61518	40.58201	K562	DROSHA
chr2	132276555	132276621	+	intron-Proximal	5.33722	40.55908	K562	SF3B4
chr2	132267395	132267440	+	intron-Distal	7.17531	40.30838	HepG2	RBFOX2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 128 entries

eCLIP assay for AC093838.4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for AC093838.4 is not available on ENCORE database.
84 RBPs can affect the levels of AC093838.4.

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The Knockdown/knockout RNA-Seq assay for AC093838.4 is not available on ENCORE database.

84 RBPs can affect the gene expression of AC093838.4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
AC093838.4	ENSG00000152117.13	4176.28720	1529.77590	1.44880	43.32990	41.10840	K562	PUS1
AC093838.4	ENSG00000152117.13	3075.79220	1482.55180	1.05280	40.70860	38.57570	K562	AGGF1
AC093838.4	ENSG00000152117.13	2892.91580	1310.56640	1.14220	26.74700	25.11970	K562	AQR
AC093838.4	ENSG00000152117.13	1130.76390	534.15300	1.08190	26.14880	24.64800	HepG2	SF3B4
AC093838.4	ENSG00000152117.13	2765.95260	1490.65340	0.89170	23.35700	21.56290	K562	RBM15
AC093838.4	ENSG00000152117.13	1122.44600	494.20590	1.18340	19.18560	17.49900	HepG2	HNRNPK
AC093838.4	ENSG00000152117.13	2777.02840	1542.68210	0.84800	16.71520	14.86490	K562	AKAP8L
AC093838.4	ENSG00000152117.13	740.38980	1248.54090	-0.75390	15.56320	14.13280	K562	DDX47
AC093838.4	ENSG00000152117.13	2233.32770	672.85610	1.73070	16.25130	13.19590	K562	PABPN1
AC093838.4	ENSG00000152117.13	2774.77680	1637.10190	0.76110	14.77760	12.32760	K562	KIF1C
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 91 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for AC093838.4 is not available on ENCORE database.

18 RBPs can affect the splicing of AC093838.4 :

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Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	AC093838.4	ENSG00000152117.13	chr2	+	132277386	132277515			132277107	132277239	132277669	132277994	-0.42600	0.00000	0.00002	excluded	K562	FXR1
SE	AC093838.4	ENSG00000152117.13	chr2	+	132277386	132277515			132277107	132277239	132277669	132277994	-0.21600	0.00000	0.00176	excluded	K562	APOBEC3C
SE	AC093838.4	ENSG00000152117.13	chr2	+	132277386	132277515			132277107	132277239	132277669	132277994	-0.63600	0.00000	0.00000	excluded	K562	HNRNPC
MXE	AC093838.4	ENSG00000152117.13	chr2	+	132258930	132259081	132263884	132264015	132258753	132258806	132266109	132266181	0.46400	0.00000	0.00000	1included	HepG2	U2AF2
SE	AC093838.4	ENSG00000152117.13	chr2	+	132277386	132277515			132277107	132277239	132277669	132277994	-0.38700	0.00001	0.00028	excluded	K562	SRSF1
SE	AC093838.4	ENSG00000152117.13	chr2	+	132277386	132277573			132277037	132277239	132277669	132277994	-0.20200	0.00001	0.00046	excluded	HepG2	U2AF1
SE	AC093838.4	ENSG00000152117.13	chr2	+	132277386	132277515			132277107	132277239	132277669	132277994	-0.36000	0.00001	0.00592	excluded	K562	PCBP1
A3SS	AC093838.4	ENSG00000152117.13	chr2	+	132263822	132264015			132263884	132264015	132258930	132259081	0.10400	0.00001	0.00011	longer	K562	AQR
A5SS	AC093838.4	ENSG00000152117.13	chr2	+	132257776	132257923			132257776	132257919	132258078	132258154	0.40800	0.00003	0.00518	longer	HepG2	RBM22
SE	AC093838.4	ENSG00000152117.13	chr2	+	132277386	132277573			132277107	132277239	132277669	132279145	-0.32700	0.00006	0.02090	excluded	HepG2	EFTUD2

Showing 1 to 10 of 22 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

AC093838.4

General Information

Functions

Localization

Domains (AlphaFold: AC093838.4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for AC093838.4 is not avaliable on ENCORE database.

26 proteins are bound to AC093838.4 RNA:

eCLIP assay for AC093838.4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for AC093838.4 is not available on ENCORE database.

84 RBPs can affect the gene expression of AC093838.4 :

The Knockdown/knockout RNA-Seq assay for AC093838.4 is not available on ENCORE database.

18 RBPs can affect the splicing of AC093838.4 :

The Knockdown/knockout RNA-Seq assay for AC093838.4 is not avaliable on ENCORE database.