AC005307.3

General Information

Gene Name : AC005307.3
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: AC005307.3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for AC005307.3 is not avaliable on ENCORE database.

Proteins bound to RNA

AC005307.3 RNA is bound by 44 proteins.

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eCLIP assay for AC005307.3 is not avaliable on ENCORE database.

44 proteins are bound to AC005307.3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	29025186	29025204	-	intron-Distal	5.65153	400.00000	K562	KHSRP
chr19	29025206	29025222	-	intron-Distal	5.25726	400.00000	K562	KHSRP
chr19	28950666	28950727	-	intron-Distal	7.22832	400.00000	K562	PTBP1
chr19	29025222	29025239	-	intron-Distal	5.24279	400.00000	K562	KHSRP
chr19	29002904	29002995	-	intron-Distal	8.46698	118.50363	K562	LIN28B
chr19	29025820	29025858	-	intron-Distal	5.23168	87.20600	K562	KHSRP
chr19	29025162	29025186	-	intron-Distal	5.71864	79.93506	K562	KHSRP
chr19	29025858	29025873	-	intron-Distal	5.02795	67.42123	K562	KHSRP
chr19	29025884	29025940	-	intron-Distal	4.17736	64.40900	K562	KHSRP
chr19	29025239	29025262	-	intron-Distal	5.43872	58.69250	K562	KHSRP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 274 entries

eCLIP assay for AC005307.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for AC005307.3 is not available on ENCORE database.
98 RBPs can affect the levels of AC005307.3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for AC005307.3 is not available on ENCORE database.

98 RBPs can affect the gene expression of AC005307.3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
AC005307.3	ENSG00000267243.1	4148.94550	2103.72540	0.97970	68.50170	65.69580	K562	NSUN2
AC005307.3	ENSG00000267243.1	553.02010	1624.84880	-1.55490	60.75430	58.16500	K562	AGGF1
AC005307.3	ENSG00000267243.1	305.69630	1283.16760	-2.06950	52.35340	49.34130	K562	PRPF8
AC005307.3	ENSG00000267243.1	4428.26960	2075.67780	1.09310	46.87740	44.16070	K562	SF3A3
AC005307.3	ENSG00000267243.1	502.58160	1676.84820	-1.73830	44.11680	41.87480	K562	PUS1
AC005307.3	ENSG00000267243.1	594.77770	1690.71110	-1.50720	38.82730	35.89170	K562	AKAP8L
AC005307.3	ENSG00000267243.1	4054.92070	1893.29090	1.09870	37.84290	35.45930	K562	MTPAP
AC005307.3	ENSG00000267243.1	731.38940	1633.73100	-1.15950	31.67530	29.59300	K562	RBM15
AC005307.3	ENSG00000267243.1	605.52930	1362.86080	-1.17040	27.03810	25.05660	K562	PTBP1
AC005307.3	ENSG00000267243.1	918.52630	1773.92950	-0.94960	24.28010	21.37420	K562	ATP5C1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 98 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for AC005307.3 is not available on ENCORE database.

9 RBPs can affect the splicing of AC005307.3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	AC005307.3	ENSG00000267243.1	chr19	-	28944750	28944842	28928547	28928625	28957308	28957687	0.05200	0.00000	0.00004	included	K562	SBDS
SE	AC005307.3	ENSG00000267243.1	chr19	-	28952193	28952404	28951245	28951352	28957308	28957600	-0.24600	0.00000	0.00001	excluded	K562	TARDBP
SE	AC005307.3	ENSG00000267243.1	chr19	-	28952193	28952404	28928391	28928625	28957308	28957600	-0.12700	0.00000	0.00003	excluded	K562	HNRNPK
A3SS	AC005307.3	ENSG00000267243.1	chr19	-	28928488	28928652	28928488	28928625	28957308	28957687	0.11800	0.00000	0.00000	longer	K562	AQR
SE	AC005307.3	ENSG00000267243.1	chr19	-	28952193	28952404	28928391	28928625	28957308	28957600	-0.08300	0.00002	0.00062	excluded	K562	HNRNPC
SE	AC005307.3	ENSG00000267243.1	chr19	-	28944750	28944842	28928547	28928625	28957308	28957687	0.14600	0.00008	0.00558	included	K562	PTBP1
SE	AC005307.3	ENSG00000267243.1	chr19	-	28952193	28952404	28928391	28928625	28957308	28957600	-0.08100	0.00040	0.00992	excluded	K562	SF3B4
SE	AC005307.3	ENSG00000267243.1	chr19	-	28952193	28952404	28928488	28928652	28957308	28957600	-0.34900	0.00090	0.01118	excluded	K562	AQR
SE	AC005307.3	ENSG00000267243.1	chr19	-	28952193	28952404	28951245	28951352	28957308	28957600	-0.25300	0.00124	0.04401	excluded	K562	PRPF8
SE	AC005307.3	ENSG00000267243.1	chr19	-	28952193	28952374	28928391	28928625	28957308	28957687	-0.06800	0.00699	0.07993	excluded	K562	PUS1

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

AC005307.3

General Information

Functions

Localization

Domains (AlphaFold: AC005307.3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for AC005307.3 is not avaliable on ENCORE database.

44 proteins are bound to AC005307.3 RNA:

eCLIP assay for AC005307.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for AC005307.3 is not available on ENCORE database.

98 RBPs can affect the gene expression of AC005307.3 :

The Knockdown/knockout RNA-Seq assay for AC005307.3 is not available on ENCORE database.

9 RBPs can affect the splicing of AC005307.3 :

The Knockdown/knockout RNA-Seq assay for AC005307.3 is not avaliable on ENCORE database.