ZNF609

General Information

Gene Name : ZNF609
Gene ID : ENSG00000180357.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: ZNF609)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	ZNF609	ENSG00000180357.9	12.97	15.40	14.19	ENCSR000AEF
HepG2	ZNF609	ENSG00000180357.9	10.11	9.28	9.70	ENCSR985KAT
K562	ZNF609	ENSG00000180357.9	21.06	23.00	22.03	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for ZNF609 is not avaliable on ENCORE database.

Proteins bound to RNA

ZNF609 RNA is bound by 56 proteins.

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eCLIP assay for ZNF609 is not avaliable on ENCORE database.

56 proteins are bound to ZNF609 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	64975968	64976046	+	3'-UTR	4.96107	72.51608	K562	PUM2
chr15	64752955	64753050	+	5'-UTR,intron-Proximal	6.52311	55.90853	HepG2	CSTF2T
chr15	64760468	64760562	+	intron-Distal	6.24607	55.30881	K562	PTBP1
chr15	64975962	64976029	+	3'-UTR	5.07584	52.57151	K562	UPF1
chr15	64974724	64974814	+	3'-UTR	5.36032	47.68649	K562	UPF1
chr15	64977300	64977361	+	3'-UTR	4.92026	42.47191	K562	PUM2
chr15	64974706	64974808	+	3'-UTR	4.38880	33.13267	K562	PCBP1
chr15	64975283	64975403	+	3'-UTR	5.29228	32.40871	K562	LIN28B
chr15	64760488	64760557	+	intron-Distal	4.46471	29.54468	HepG2	PTBP1
chr15	64752944	64752995	+	5'-UTR	5.03068	28.44778	K562	GTF2F1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 218 entries

eCLIP assay for ZNF609 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for ZNF609 is not available on ENCORE database.
87 RBPs can affect the levels of ZNF609.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for ZNF609 is not available on ENCORE database.

87 RBPs can affect the gene expression of ZNF609 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
ZNF609	ENSG00000180357.5	1253.11750	2160.66300	-0.78600	24.60780	23.41610	HepG2	SSB
ZNF609	ENSG00000180357.5	1554.84880	2347.14080	-0.59410	18.77770	17.66620	HepG2	ZNF622
ZNF609	ENSG00000180357.5	1001.14880	1613.63030	-0.68870	17.33330	16.02630	HepG2	PUS1
ZNF609	ENSG00000180357.5	1734.93530	2636.33580	-0.60370	15.59700	14.36160	HepG2	ETF1
ZNF609	ENSG00000180357.5	844.84790	1476.92740	-0.80580	15.03290	14.03220	HepG2	TIAL1
ZNF609	ENSG00000180357.5	1599.11020	2889.84860	-0.85370	14.93620	13.17830	K562	PRPF8
ZNF609	ENSG00000180357.5	1071.35210	1583.72030	-0.56390	12.93380	11.71040	HepG2	CKAP4
ZNF609	ENSG00000180357.5	1392.27330	2061.80940	-0.56650	11.62750	10.40910	HepG2	ZC3H8
ZNF609	ENSG00000180357.5	6445.25550	5180.38810	0.31510	10.78750	9.44690	K562	NSUN2
ZNF609	ENSG00000180357.5	600.72330	1105.37630	-0.87980	10.64510	9.24150	HepG2	XRN2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 102 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for ZNF609 is not available on ENCORE database.

5 RBPs can affect the splicing of ZNF609 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	ZNF609	ENSG00000180357.5	chr15	+	64973507	64973586	64972844	64973061	64973890	64978264	-0.14700	0.00002	0.00080	excluded	K562	U2AF1
SE	ZNF609	ENSG00000180357.5	chr15	+	64973507	64973586	64972844	64973061	64973890	64978264	-0.10000	0.00071	0.01495	excluded	K562	U2AF2
SE	ZNF609	ENSG00000180357.5	chr15	+	64973522	64973586	64972979	64973061	64973890	64978264	-0.12000	0.00198	0.04585	excluded	K562	RBM15
SE	ZNF609	ENSG00000180357.5	chr15	+	64973522	64973586	64972979	64973061	64973890	64978264	-0.15700	0.00209	0.03112	excluded	K562	PUS1
SE	ZNF609	ENSG00000180357.5	chr15	+	64966114	64968455	64962544	64962632	64970314	64970681	-0.10000	0.00523	0.07179	excluded	K562	HNRNPC

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

ZNF609

General Information

Functions

Localization

Domains (AlphaFold: ZNF609)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for ZNF609 is not avaliable on ENCORE database.

56 proteins are bound to ZNF609 RNA:

eCLIP assay for ZNF609 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for ZNF609 is not available on ENCORE database.

87 RBPs can affect the gene expression of ZNF609 :

The Knockdown/knockout RNA-Seq assay for ZNF609 is not available on ENCORE database.

5 RBPs can affect the splicing of ZNF609 :

The Knockdown/knockout RNA-Seq assay for ZNF609 is not avaliable on ENCORE database.