WDR13

General Information

Gene Name       : WDR13
Gene ID             : ENSG00000101940.17
Essential Gene : No

Functions

Localization

Domains (AlphaFold: WDR13)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878WDR13ENSG00000101940.172.4513.487.96ENCSR000AEF
HepG2WDR13ENSG00000101940.1734.269.2521.75ENCSR985KAT
K562WDR13ENSG00000101940.1739.6420.4730.05ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for WDR13 is not avaliable on ENCORE database.



Proteins bound to RNA
  • WDR13 RNA is bound by 15 proteins.  







eCLIP assay for WDR13 is not avaliable on ENCORE database.





15 proteins are bound to WDR13 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX4846333448463424+3'-UTR,CDS4.418604.25576HepG2PABPN1
chrX4846340548463463+3'-UTR,CDS3.903385.37920K562PABPC4
chrX4846347948463514+3'-UTR,polyA_site5.807566.59792K562PABPC4
chrX4846344048463534+3'-UTR,polyA_site5.6905429.03563K562PUM2
chrX4845631248456359+5'-UTR,intron-Proximal4.993203.91589K562SF3B4
chrX4845634348456461+5'-UTR,CDS,intron-Proximal3.346513.68881HepG2SRSF1
chrX4845603348456207+5'-UTR,intron-Distal,intron-Proximal5.3616611.08680HepG2PRPF4
chrX4845611048456184+5'-UTR,intron-Distal,intron-Proximal4.041233.84029K562DROSHA
chrX4845633348456378+5'-UTR,intron-Proximal4.527317.92018K562AQR
chrX4845634348456383+5'-UTR,intron-Proximal4.258643.49905HepG2PPIG
chrX4845613248456203+5'-UTR,intron-Distal,intron-Proximal5.105097.85180K562LIN28B
chrX4845782248457851+CDS,intron-Proximal5.427587.06060HepG2PPIG
chrX4846045248460564+CDS,intron-Proximal4.002596.99061HepG2PABPN1
chrX4845870648458749+CDS,intron-Proximal5.100898.25598HepG2PPIG
chrX4845702248457113+CDS,intron-Distal,intron-Proximal3.250487.27143K562SF3B4
chrX4845773948457795+CDS,intron-Proximal3.619856.78387K562SRSF1
chrX4846277648462821+CDS,intron-Proximal4.538676.99120K562AQR
chrX4845805948458105+CDS3.515524.59506K562DDX24
chrX4845702748457111+CDS,intron-Distal,intron-Proximal4.823287.30117HepG2SF3B4
chrX4846045248460521+CDS,intron-Proximal4.854964.67689HepG2PPIG
chrX4846270248462781+CDS,intron-Proximal4.498685.58993HepG2PABPN1
chrX4845705248457118+CDS,intron-Proximal4.8159624.22695K562AQR
chrX4845772448457795+CDS,intron-Proximal4.1848311.64859K562AQR
chrX4845790148458008+CDS,intron-Proximal3.132827.97922K562BUD13
chrX4846016248460202+CDS,intron-Proximal3.275873.75245K562BUD13
chrX4845723348457341+CDS3.7685713.98384K562RPS3
chrX4845807248458106+CDS,intron-Proximal4.997667.06060HepG2PPIG
chrX4845797348458040+CDS,intron-Proximal3.823106.98305HepG2PPIG
chrX4845734448457350+CDS,intron-Proximal5.0824011.03354K562AQR
chrX4845642248456430+CDS,intron-Proximal6.7035620.26131K562AQR
chrX4845653748456574+intron-Distal4.577078.01338K562AQR
chrX4845651048456543+intron-Distal,intron-Proximal3.080563.37981HepG2RBFOX2
chrX4845673948456799+intron-Distal3.619175.58194HepG2HNRNPK
chrX4845672848456813+intron-Distal3.290317.60024K562HNRNPK
chrX4846011048460171+intron-Proximal3.361686.06585K562SF3B4
chrX4845646548456510+intron-Proximal4.632733.97974HepG2RBFOX2
chrX4845735048457387+intron-Proximal4.2160314.76150K562AQR
chrX4845643048456472+intron-Proximal6.0680027.17135K562AQR
chrX4846010948460170+intron-Proximal3.346527.74647HepG2SF3B4
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for WDR13 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for WDR13 is not available on ENCORE database.

  • 106 RBPs can affect the levels of WDR13.  








The Knockdown/knockout RNA-Seq assay for WDR13 is not available on ENCORE database.





106 RBPs can affect the gene expression of WDR13 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
WDR13ENSG00000101940.13607.43550424.068500.518305.565704.76310HepG2ACO1
WDR13ENSG00000101940.13908.38270587.478200.628702.899502.35580HepG2AKAP1
WDR13ENSG00000101940.13637.40050426.048900.581106.512005.38390HepG2AKAP8L
WDR13ENSG00000101940.13644.57710486.056500.407102.281801.56570HepG2ASCC1
WDR13ENSG00000101940.13798.07320585.520400.446704.781603.92090HepG2AUH
WDR13ENSG00000101940.13631.42530420.748500.585604.612403.86340HepG2BOP1
WDR13ENSG00000101940.13585.16020320.034800.870504.104303.16610HepG2CNOT7
WDR13ENSG00000101940.13499.85270386.253900.371901.880701.30210HepG2CPSF6
WDR13ENSG00000101940.13594.41280421.119900.497103.526602.28340HepG2CPSF7
WDR13ENSG00000101940.13573.19950271.664101.077104.211603.44950HepG2CELF1
WDR13ENSG00000101940.13440.18210292.052700.591805.895704.87120HepG2DAZAP1
WDR13ENSG00000101940.13559.92550240.093101.221509.642308.30160HepG2DDX55
WDR13ENSG00000101940.131142.39820483.526201.2403011.6155010.45460HepG2DDX6
WDR13ENSG00000101940.13529.87600405.714900.385102.766502.08930HepG2DKC1
WDR13ENSG00000101940.13369.49940176.000301.0699010.390609.09750HepG2DNAJC21
WDR13ENSG00000101940.13357.11340174.503301.033006.897005.93250HepG2DNAJC2
WDR13ENSG00000101940.13739.00160464.663000.669305.484804.66630HepG2EIF2S1
WDR13ENSG00000101940.13365.59070288.173500.343202.049701.31070HepG2EIF4G1
WDR13ENSG00000101940.13418.20720276.043600.599204.096503.11770HepG2EIF4G2
WDR13ENSG00000101940.13872.02680672.308500.375103.378502.72360HepG2ETF1
WDR13ENSG00000101940.13287.27750185.468100.631203.461002.13520HepG2FAM120A
WDR13ENSG00000101940.13414.75810273.273500.601803.507901.63020HepG2FMR1
WDR13ENSG00000101940.13362.38710491.60280-0.440002.693101.91700HepG2FUBP3
WDR13ENSG00000101940.13671.34940480.642400.482001.980701.41400HepG2G3BP1
WDR13ENSG00000101940.13751.29470437.804600.779006.673905.70780HepG2GPKOW
WDR13ENSG00000101940.13435.94890270.948200.686003.874602.23400HepG2HNRNPA0
WDR13ENSG00000101940.13270.43760177.687100.605902.401801.79650HepG2HNRNPA1
WDR13ENSG00000101940.13378.35010268.430300.495103.472502.44330HepG2HNRNPA2B1
WDR13ENSG00000101940.13432.96190264.550500.710604.402802.63010HepG2HNRNPAB
WDR13ENSG00000101940.13492.35050371.916200.404602.880102.15020HepG2HNRNPF
WDR13ENSG00000101940.13517.84470266.021600.9609014.7289013.28450HepG2HNRNPL
WDR13ENSG00000101940.13629.31890417.809000.590804.234403.47080HepG2HNRNPLL
WDR13ENSG00000101940.13416.10430196.354801.083404.958204.16610HepG2HNRNPU
WDR13ENSG00000101940.13394.24940200.566600.9749010.810609.46380HepG2ILF2
WDR13ENSG00000101940.13482.78930387.642800.316602.234601.31650HepG2KIF1C
WDR13ENSG00000101940.13812.54920558.129400.541803.413202.49010HepG2LARP4
WDR13ENSG00000101940.13367.47770219.152800.745602.652401.54170HepG2LARP7
WDR13ENSG00000101940.13711.74960533.559100.415602.347901.76240HepG2NCBP2
WDR13ENSG00000101940.13642.53770289.601601.1496010.923009.44520HepG2NOL12
WDR13ENSG00000101940.13367.79420220.631600.737202.287201.30490HepG2NONO
WDR13ENSG00000101940.13258.75450154.987600.739303.099601.40870HepG2PA2G4
WDR13ENSG00000101940.13622.47040475.024800.389902.133301.49220HepG2PABPC4
WDR13ENSG00000101940.13327.68170194.333900.753705.963204.79250HepG2PARN
WDR13ENSG00000101940.13374.27810175.129401.0956012.4313010.93710HepG2PPIL4
WDR13ENSG00000101940.13694.80530479.618300.534605.694104.96600HepG2PTBP1
WDR13ENSG00000101940.13473.77440276.464800.777007.097906.19900HepG2PUF60
WDR13ENSG00000101940.13714.31080293.496701.2831031.3630029.80840HepG2PUM1
WDR13ENSG00000101940.13549.78840293.271700.9065010.809709.53260HepG2PUM2
WDR13ENSG00000101940.13563.74960431.939100.384103.204502.55320HepG2PUS1
WDR13ENSG00000101940.13770.80730585.833000.395803.336102.40320HepG2RBM15
WDR13ENSG00000101940.13746.90540533.758500.484604.905804.22100HepG2NELFE
WDR13ENSG00000101940.13305.45890201.866700.597503.019302.38120HepG2RPS19
WDR13ENSG00000101940.13424.21760243.700900.799603.280402.40900HepG2RPS2
WDR13ENSG00000101940.13415.66160248.810000.740302.591801.55410HepG2RPS5
WDR13ENSG00000101940.13355.81490174.851401.024908.577107.53500HepG2SAFB2
WDR13ENSG00000101940.13454.81820265.121900.778509.232008.06860HepG2SLBP
WDR13ENSG00000101940.13380.81950203.887500.901207.283806.31670HepG2SMN1
WDR13ENSG00000101940.13489.29170213.339801.197407.524405.89400HepG2SMNDC1
WDR13ENSG00000101940.13298.90540521.19300-0.802108.629307.90000HepG2SRSF1
WDR13ENSG00000101940.13390.89980272.989300.517904.027403.29770HepG2SRSF5
WDR13ENSG00000101940.13663.15230424.026300.645108.514407.63950HepG2SRSF9
WDR13ENSG00000101940.13515.46430279.932800.880706.888905.09140HepG2STIP1
WDR13ENSG00000101940.13598.47230310.446400.9468015.2958014.02480HepG2SUCLG1
WDR13ENSG00000101940.13415.99280238.958200.799703.751102.98100HepG2SUPV3L1
WDR13ENSG00000101940.13235.59480468.49450-0.9917011.1963010.18840HepG2TAF15
WDR13ENSG00000101940.13394.66690190.724201.0490010.9618010.08100HepG2TIAL1
WDR13ENSG00000101940.13505.69180192.505501.3933023.5581022.11090HepG2TRIM56
WDR13ENSG00000101940.13390.47870270.122400.531503.472302.48130HepG2TUFM
WDR13ENSG00000101940.13262.41400441.72990-0.751304.988204.15850HepG2U2AF1
WDR13ENSG00000101940.13661.40640285.938801.209707.860406.41890HepG2UBE2L3
WDR13ENSG00000101940.13218.07150141.125300.627702.292701.60090HepG2UCHL5
WDR13ENSG00000101940.13528.70990423.324900.320602.328901.68010HepG2UPF1
WDR13ENSG00000101940.13500.92670288.145800.797704.160802.81140HepG2XPO5
WDR13ENSG00000101940.13409.18090235.229700.798603.932803.07630HepG2XRN2
WDR13ENSG00000101940.13445.10770286.449000.635806.160305.22020HepG2ZC3H8
WDR13ENSG00000101940.13768.42480465.577700.7228012.3934011.44360HepG2ZNF622
WDR13ENSG00000101940.132270.226501745.082200.379403.939003.15870K562AKAP8L
WDR13ENSG00000101940.13843.66610530.279700.669809.627307.81690K562BCLAF1
WDR13ENSG00000101940.13982.53500634.418300.631005.904004.61750K562BOP1
WDR13ENSG00000101940.13897.77970626.342500.519302.549301.32200K562CIRBP
WDR13ENSG00000101940.13883.81280674.561100.389703.277102.42120K562CPSF6
WDR13ENSG00000101940.13626.36720402.296200.638706.091004.43970K562CSTF2
WDR13ENSG00000101940.13679.31490464.937900.546906.218304.23530K562DDX27
WDR13ENSG00000101940.13836.662901136.16370-0.441502.106501.52540K562DDX47
WDR13ENSG00000101940.131397.156901877.69270-0.426505.908604.56190K562DKC1
WDR13ENSG00000101940.131172.11290661.676500.824808.900007.72250K562EIF2S2
WDR13ENSG00000101940.13851.221301073.29040-0.334402.391701.62670K562EIF4A3
WDR13ENSG00000101940.131251.27110966.572500.372304.146302.68240K562EIF4B
WDR13ENSG00000101940.13757.25230566.959500.417402.929002.05560K562FIP1L1
WDR13ENSG00000101940.13414.471701116.17970-1.4292039.8003037.65850K562FXR1
WDR13ENSG00000101940.1366.06260323.82500-2.2933016.4777014.38900K562G3BP2
WDR13ENSG00000101940.131182.56730644.033700.8766012.9490011.20970K562GPKOW
WDR13ENSG00000101940.131338.214501101.070200.281302.636901.76470K562HNRNPU
WDR13ENSG00000101940.13990.77670768.701000.366002.507501.74680K562HSPD1
WDR13ENSG00000101940.131296.10290584.833301.148008.118005.99860K562IGF2BP2
WDR13ENSG00000101940.13957.81750594.677700.687508.152305.98250K562IGF2BP3
WDR13ENSG00000101940.13790.64200628.651300.330702.166001.39040K562METAP2
WDR13ENSG00000101940.131054.871901454.14790-0.463102.833501.93840K562NAA15
WDR13ENSG00000101940.13486.50900929.73990-0.934403.995002.99540K562PCBP3
WDR13ENSG00000101940.131506.710501089.545400.467602.990401.36780K562PKM
WDR13ENSG00000101940.13347.24230713.08820-1.038104.995703.91540K562POLR2G
WDR13ENSG00000101940.131099.32100643.586300.772306.623105.25720K562PPIG
WDR13ENSG00000101940.13924.47290611.679900.595804.189203.04300K562PSIP1
WDR13ENSG00000101940.13962.451301613.83760-0.745707.310305.98240K562PUF60
WDR13ENSG00000101940.131286.493001717.02330-0.416504.370703.00430K562PUM1
WDR13ENSG00000101940.13801.53240558.466100.521203.221502.14760K562RCC2
WDR13ENSG00000101940.131012.630801210.05240-0.257002.660201.73910K562SRPK2
WDR13ENSG00000101940.131023.34550552.684000.888709.470407.40160K562SRSF5
WDR13ENSG00000101940.13418.83040715.32070-0.772204.235503.21360K562SYNCRIP
WDR13ENSG00000101940.13890.17450592.031400.588302.790802.08070K562TARDBP
WDR13ENSG00000101940.131099.91270571.109000.9455011.077209.32000K562TIA1
WDR13ENSG00000101940.13920.45270560.678600.715104.016902.66140K562TRA2A
WDR13ENSG00000101940.131012.48530625.411000.694906.010904.49590K562TRIM56
WDR13ENSG00000101940.131659.281601345.299900.302503.931902.41570K562TROVE2
WDR13ENSG00000101940.13141.41580313.63180-1.149108.571406.47920K562U2AF1
WDR13ENSG00000101940.13117.18400323.99840-1.4672016.3165014.33430K562U2AF2
WDR13ENSG00000101940.132039.419601269.028000.684306.236805.20970K562UPF1
WDR13ENSG00000101940.13950.287601129.23480-0.248902.461001.66020K562WDR43
WDR13ENSG00000101940.132027.509001508.723900.426302.386501.59340K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for WDR13 is not available on ENCORE database.





6 RBPs can affect the splicing of WDR13 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEWDR13ENSG00000101940.13chrX+484587064845901448457974484581054846017148460352-0.125000.000760.01538excludedK562HNRNPC
A5SSWDR13ENSG00000101940.13chrX+484563454845654048456345484564254845710448457345-0.140000.000040.01216shorterK562HNRNPUL1
A5SSWDR13ENSG00000101940.13chrX+4845634548456540484563454845642548457104484573450.156000.000660.01303longerK562AQR
A5SSWDR13ENSG00000101940.13chrX+484563454845654048456345484564254845710448457345-0.185000.000050.00973shorterK562PTBP1
MXEWDR13ENSG00000101940.13chrX+4845870648459014484604524846059448457974484581054846265948462778-0.154000.000030.005592includedK562PUM1
MXEWDR13ENSG00000101940.13chrX+4845797448458105484601714846035248457740484578504846045248460594-0.142000.000010.002652includedK562PUM1
MXEWDR13ENSG00000101940.13chrX+48457974484581054845870648459014484577404845785048460171484603520.209000.000130.003841includedK562HNRNPC
MXEWDR13ENSG00000101940.13chrX+48457974484581054845870648459014484577404845785048460171484603520.213000.000290.009961includedK562SUPV3L1
MXEWDR13ENSG00000101940.13chrX+48457974484580114845870648459014484577404845785048460171484603520.172000.003770.066391includedK562SUPV3L1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for WDR13 is not avaliable on ENCORE database.